Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SNX3O60493 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX3O60493 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.18■□□□□ 0.98
SNX3O60493 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SNX3O60493 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNX3O60493 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SNX3O60493 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.17■□□□□ 0.98
SNX3O60493 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.17■□□□□ 0.98
SNX3O60493 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SNX3O60493 DUX4L4-201ENST00000566884 1269 ntBASIC21.17■□□□□ 0.98
SNX3O60493 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SNX3O60493 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SNX3O60493 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.17■□□□□ 0.98
SNX3O60493 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.17■□□□□ 0.98
SNX3O60493 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.17■□□□□ 0.98
SNX3O60493 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SNX3O60493 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SNX3O60493 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SNX3O60493 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SNX3O60493 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
SNX3O60493 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SNX3O60493 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
SNX3O60493 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SNX3O60493 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SNX3O60493 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SNX3O60493 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SNX3O60493 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.16■□□□□ 0.98
SNX3O60493 AC120024.1-201ENST00000562672 995 ntBASIC21.16■□□□□ 0.98
SNX3O60493 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.16■□□□□ 0.98
SNX3O60493 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.15■□□□□ 0.98
SNX3O60493 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SNX3O60493 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SNX3O60493 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.15■□□□□ 0.98
SNX3O60493 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SNX3O60493 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SNX3O60493 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
SNX3O60493 AC104564.3-201ENST00000582367 638 ntBASIC21.15■□□□□ 0.98
SNX3O60493 AP005212.1-201ENST00000581547 1997 ntBASIC21.15■□□□□ 0.98
SNX3O60493 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SNX3O60493 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SNX3O60493 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SNX3O60493 AC004687.1-201ENST00000579003 1625 ntBASIC21.15■□□□□ 0.98
SNX3O60493 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SNX3O60493 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SNX3O60493 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.14■□□□□ 0.98
SNX3O60493 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
SNX3O60493 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SNX3O60493 AFG3L1P-217ENST00000557444 2447 ntBASIC21.14■□□□□ 0.97
SNX3O60493 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SNX3O60493 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SNX3O60493 AL049796.1-201ENST00000565336 1766 ntBASIC21.14■□□□□ 0.97
SNX3O60493 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SNX3O60493 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.14■□□□□ 0.97
SNX3O60493 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SNX3O60493 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.14■□□□□ 0.97
SNX3O60493 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.14■□□□□ 0.97
SNX3O60493 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SNX3O60493 C17orf82-201ENST00000623772 1530 ntBASIC21.14■□□□□ 0.97
SNX3O60493 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.14■□□□□ 0.97
SNX3O60493 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.13■□□□□ 0.97
SNX3O60493 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.13■□□□□ 0.97
SNX3O60493 AC019171.1-201ENST00000601251 1056 ntBASIC21.13■□□□□ 0.97
SNX3O60493 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.13■□□□□ 0.97
SNX3O60493 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SNX3O60493 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.12■□□□□ 0.97
SNX3O60493 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SNX3O60493 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SNX3O60493 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SNX3O60493 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.12■□□□□ 0.97
SNX3O60493 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.12■□□□□ 0.97
SNX3O60493 MIR4281-201ENST00000580852 62 ntBASIC21.12■□□□□ 0.97
SNX3O60493 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.12■□□□□ 0.97
SNX3O60493 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.12■□□□□ 0.97
SNX3O60493 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SNX3O60493 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.12■□□□□ 0.97
SNX3O60493 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SNX3O60493 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SNX3O60493 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.12■□□□□ 0.97
SNX3O60493 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms