Protein–RNA interactions for Protein: O60287

URB1, Nucleolar pre-ribosomal-associated protein 1, humanhuman

Known RBP Predictions only

Length 2,271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
URB1O60287 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
URB1O60287 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
URB1O60287 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
URB1O60287 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
URB1O60287 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
URB1O60287 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
URB1O60287 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.3■□□□□ 0.84
URB1O60287 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.3■□□□□ 0.84
URB1O60287 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.29■□□□□ 0.84
URB1O60287 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
URB1O60287 MIPEPP3-201ENST00000412105 444 ntBASIC20.29■□□□□ 0.84
URB1O60287 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
URB1O60287 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.29■□□□□ 0.84
URB1O60287 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
URB1O60287 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
URB1O60287 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
URB1O60287 AL512625.2-201ENST00000417533 625 ntBASIC20.29■□□□□ 0.84
URB1O60287 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
URB1O60287 KRT18P20-201ENST00000548986 1279 ntBASIC20.29■□□□□ 0.84
URB1O60287 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.29■□□□□ 0.84
URB1O60287 AC016405.3-201ENST00000607710 860 ntBASIC20.29■□□□□ 0.84
URB1O60287 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.29■□□□□ 0.84
URB1O60287 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
URB1O60287 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
URB1O60287 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
URB1O60287 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.28■□□□□ 0.84
URB1O60287 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.28■□□□□ 0.84
URB1O60287 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.28■□□□□ 0.84
URB1O60287 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.28■□□□□ 0.84
URB1O60287 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.28■□□□□ 0.84
URB1O60287 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
URB1O60287 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
URB1O60287 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.27■□□□□ 0.84
URB1O60287 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
URB1O60287 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
URB1O60287 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
URB1O60287 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
URB1O60287 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
URB1O60287 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
URB1O60287 AC211429.1-201ENST00000415277 523 ntBASIC20.27■□□□□ 0.84
URB1O60287 AC073912.3-201ENST00000624414 853 ntBASIC20.27■□□□□ 0.84
URB1O60287 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.27■□□□□ 0.84
URB1O60287 AC138932.3-201ENST00000567634 1902 ntBASIC20.27■□□□□ 0.84
URB1O60287 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
URB1O60287 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.27■□□□□ 0.83
URB1O60287 CYP2T1P-201ENST00000432607 1285 ntBASIC20.27■□□□□ 0.83
URB1O60287 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.27■□□□□ 0.83
URB1O60287 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
URB1O60287 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
URB1O60287 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.26■□□□□ 0.83
URB1O60287 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
URB1O60287 BX276092.2-201ENST00000417668 665 ntBASIC20.26■□□□□ 0.83
URB1O60287 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.26■□□□□ 0.83
URB1O60287 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.26■□□□□ 0.83
URB1O60287 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.26■□□□□ 0.83
URB1O60287 AC008694.1-202ENST00000636953 945 ntBASIC20.26■□□□□ 0.83
URB1O60287 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
URB1O60287 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.26■□□□□ 0.83
URB1O60287 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
URB1O60287 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.26■□□□□ 0.83
URB1O60287 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
URB1O60287 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
URB1O60287 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
URB1O60287 FAM210CP-201ENST00000445714 574 ntBASIC20.25■□□□□ 0.83
URB1O60287 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.25■□□□□ 0.83
URB1O60287 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.25■□□□□ 0.83
URB1O60287 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.25■□□□□ 0.83
URB1O60287 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.25■□□□□ 0.83
URB1O60287 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
URB1O60287 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
URB1O60287 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.25■□□□□ 0.83
URB1O60287 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.25■□□□□ 0.83
URB1O60287 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.25■□□□□ 0.83
URB1O60287 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 AC138907.5-202ENST00000569484 235 ntBASIC20.25■□□□□ 0.83
URB1O60287 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.25■□□□□ 0.83
URB1O60287 AC055733.4-201ENST00000638462 1354 ntBASIC20.25■□□□□ 0.83
URB1O60287 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
URB1O60287 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.25■□□□□ 0.83
URB1O60287 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
URB1O60287 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
URB1O60287 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
URB1O60287 AC097658.1-201ENST00000475555 843 ntBASIC20.24■□□□□ 0.83
URB1O60287 AC026366.1-201ENST00000488803 879 ntBASIC20.24■□□□□ 0.83
URB1O60287 AC091874.3-201ENST00000512672 1195 ntBASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms