Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 AC090192.1-201ENST00000517740 490 ntBASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SMIM28A0A1B0GU29 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SMIM28A0A1B0GU29 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 AC080038.3-201ENST00000623346 1952 ntBASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 AC127496.7-201ENST00000625110 1798 ntBASIC23.12■■□□□ 1.29
SMIM28A0A1B0GU29 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
SMIM28A0A1B0GU29 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
SMIM28A0A1B0GU29 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 AC080038.1-201ENST00000611274 1154 ntBASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.09■■□□□ 1.29
SMIM28A0A1B0GU29 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.08■■□□□ 1.29
SMIM28A0A1B0GU29 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SMIM28A0A1B0GU29 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
SMIM28A0A1B0GU29 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.08■■□□□ 1.29
SMIM28A0A1B0GU29 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.08■■□□□ 1.29
SMIM28A0A1B0GU29 GAS2L1P2-201ENST00000436355 1356 ntBASIC23.08■■□□□ 1.29
SMIM28A0A1B0GU29 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.08■■□□□ 1.28
SMIM28A0A1B0GU29 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SMIM28A0A1B0GU29 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
SMIM28A0A1B0GU29 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SMIM28A0A1B0GU29 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.08■■□□□ 1.28
SMIM28A0A1B0GU29 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SMIM28A0A1B0GU29 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SMIM28A0A1B0GU29 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms