Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 C17orf82-201ENST00000623772 1530 ntBASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV1-1A0A0B4J248 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 AC133552.2-201ENST00000619106 1032 ntBASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV1-1A0A0B4J248 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TRAV1-1A0A0B4J248 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV1-1A0A0B4J248 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TRAV1-1A0A0B4J248 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV1-1A0A0B4J248 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms