Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.673e-16■■■■■ 34.5
SF3B1O75533 POLR2B-208ENST00000478188 3093 ntTSL 24.62□□□□□ -1.674e-6■■■■■ 34.5
SF3B1O75533 PICALM-216ENST00000531771 631 ntTSL 34.56□□□□□ -1.682e-6■■■■■ 34.5
SF3B1O75533 CPSF6-206ENST00000550987 560 ntTSL 44.46□□□□□ -1.74e-8■■■■■ 34.5
SF3B1O75533 SPPL2A-203ENST00000558414 564 ntTSL 44.45□□□□□ -1.74e-6■■■■■ 34.5
SF3B1O75533 SUSD1-210ENST00000532348 526 ntTSL 34.43□□□□□ -1.74e-6■■■■■ 34.5
SF3B1O75533 MTMR1-205ENST00000436701 448 ntTSL 54.42□□□□□ -1.74e-6■■■■■ 34.5
SF3B1O75533 COG6-205ENST00000460701 318 ntTSL 34.35□□□□□ -1.714e-6■■■■■ 34.5
SF3B1O75533 SUPT3H-204ENST00000459689 396 ntTSL 24.32□□□□□ -1.724e-7■■■■■ 34.5
SF3B1O75533 METTL17-215ENST00000555390 551 ntTSL 34.26□□□□□ -1.734e-6■■■■■ 34.5
SF3B1O75533 PDCD6IP-213ENST00000487821 750 ntTSL 44.18□□□□□ -1.744e-8■■■■■ 34.5
SF3B1O75533 EIF5-213ENST00000560200 776 ntTSL 54.18□□□□□ -1.744e-9■■■■■ 34.5
SF3B1O75533 NCSTN-213ENST00000491332 490 ntTSL 34.17□□□□□ -1.744e-6■■■■■ 34.5
SF3B1O75533 KIAA1109-209ENST00000446180 4476 ntTSL 1 (best)3.98□□□□□ -1.774e-6■■■■■ 34.5
SF3B1O75533 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.91□□□□□ -1.785e-11■■■■■ 34.5
SF3B1O75533 PDCD6IP-202ENST00000412887 842 ntTSL 33.9□□□□□ -1.794e-8■■■■■ 34.5
SF3B1O75533 TANK-209ENST00000432692 576 ntTSL 53.85□□□□□ -1.794e-6■■■■■ 34.5
SF3B1O75533 TANK-213ENST00000441987 533 ntTSL 53.85□□□□□ -1.794e-6■■■■■ 34.5
SF3B1O75533 SS18-214ENST00000580003 609 ntTSL 23.75□□□□□ -1.814e-8■■■■■ 34.5
SF3B1O75533 SUZ12P1-205ENST00000582329 785 ntTSL 53.64□□□□□ -1.834e-6■■■■■ 34.5
SF3B1O75533 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.63□□□□□ -1.834e-6■■■■■ 34.5
SF3B1O75533 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.834e-7■■■■■ 34.5
SF3B1O75533 TANK-220ENST00000477952 427 ntTSL 23.29□□□□□ -1.884e-6■■■■■ 34.5
SF3B1O75533 TANK-208ENST00000432002 600 ntTSL 53.2□□□□□ -1.94e-6■■■■■ 34.5
SF3B1O75533 TRPM7-203ENST00000560284 987 ntTSL 53.19□□□□□ -1.94e-9■■■■■ 34.5
SF3B1O75533 UBAP2-210ENST00000480885 4572 ntTSL 23.16□□□□□ -1.94e-6■■■■■ 34.5
SF3B1O75533 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.11□□□□□ -1.914e-6■■■■■ 34.5
SF3B1O75533 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.924e-6■■■■■ 34.5
SF3B1O75533 EIF5-218ENST00000561325 569 ntTSL 43.02□□□□□ -1.934e-9■■■■■ 34.5
SF3B1O75533 POLR2B-207ENST00000464918 444 ntTSL 22.99□□□□□ -1.934e-6■■■■■ 34.5
SF3B1O75533 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.97□□□□□ -1.934e-6■■■■■ 34.5
SF3B1O75533 POLR2B-209ENST00000484821 446 ntTSL 32.93□□□□□ -1.944e-6■■■■■ 34.5
SF3B1O75533 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.954e-7■■■■■ 34.5
SF3B1O75533 KATNBL1-207ENST00000559464 572 ntTSL 32.83□□□□□ -1.964e-7■■■■■ 34.5
SF3B1O75533 BMP2K-205ENST00000505725 566 ntTSL 32.73□□□□□ -1.974e-7■■■■■ 34.5
SF3B1O75533 IFRD1-208ENST00000443101 440 ntTSL 32.68□□□□□ -1.984e-8■■■■■ 34.5
SF3B1O75533 DNAJC2-208ENST00000475065 1952 ntTSL 1 (best)2.62□□□□□ -1.994e-6■■■■■ 34.5
SF3B1O75533 XPO1-217ENST00000475744 249 ntTSL 22.49□□□□□ -2.015e-11■■■■■ 34.5
SF3B1O75533 NUPL2-208ENST00000486136 350 ntTSL 22.47□□□□□ -2.014e-10■■■■■ 34.5
SF3B1O75533 RPA1-204ENST00000571725 413 ntTSL 52.44□□□□□ -2.024e-6■■■■■ 34.5
SF3B1O75533 ARPC3-208ENST00000548878 532 ntTSL 52.39□□□□□ -2.034e-7■■■■■ 34.5
SF3B1O75533 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.044e-6■■■■■ 34.5
SF3B1O75533 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.064e-6■■■■■ 34.5
SF3B1O75533 CEP57L1-212ENST00000520761 865 ntTSL 52.15□□□□□ -2.074e-6■■■■■ 34.5
SF3B1O75533 ZNF611-217ENST00000601643 531 ntTSL 41.89□□□□□ -2.114e-7■■■■■ 34.5
SF3B1O75533 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.114e-6■■■■■ 34.5
SF3B1O75533 ARPC3-206ENST00000476566 362 ntTSL 21.82□□□□□ -2.124e-7■■■■■ 34.5
SF3B1O75533 ARPC3-207ENST00000547365 308 ntTSL 21.67□□□□□ -2.144e-7■■■■■ 34.5
SF3B1O75533 NUP54-208ENST00000508604 1671 ntTSL 21.43□□□□□ -2.184e-6■■■■■ 34.5
SF3B1O75533 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.27□□□□□ -2.374e-6■■■■■ 34.5
SF3B1O75533 SETD2-204ENST00000431180 7555 ntTSL 25.74□□□□□ -1.492e-6■■■■■ 34.4
SF3B1O75533 SETD2-201ENST00000330022 8172 ntTSL 1 (best)5.66□□□□□ -1.52e-6■■■■■ 34.4
SF3B1O75533 SETD2-205ENST00000445387 7075 ntTSL 54.15□□□□□ -1.752e-6■■■■■ 34.4
SF3B1O75533 GAB2-207ENST00000534823 568 ntTSL 322.06■■□□□ 1.123e-6■■■■■ 34.4
SF3B1O75533 SETD2-209ENST00000638947 1984 ntTSL 5 BASIC12.19□□□□□ -0.462e-6■■■■■ 34.4
SF3B1O75533 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.031e-6■■■■■ 34.4
SF3B1O75533 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.041e-6■■■■■ 34.4
SF3B1O75533 ATXN2L-211ENST00000563314 4574 ntTSL 514.58□□□□□ -0.071e-6■■■■■ 34.4
SF3B1O75533 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.251e-6■■■■■ 34.4
SF3B1O75533 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.271e-6■■■■■ 34.4
SF3B1O75533 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.311e-6■■■■■ 34.4
SF3B1O75533 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.381e-6■■■■■ 34.4
SF3B1O75533 ZMYND8-215ENST00000468376 4064 ntTSL 1 (best)9.81□□□□□ -0.841e-6■■■■■ 34.4
SF3B1O75533 CDC45-208ENST00000471470 857 ntTSL 513.61□□□□□ -0.235e-10■■■■■ 34.4
SF3B1O75533 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.484e-6■■■■■ 34.4
SF3B1O75533 IVNS1ABP-204ENST00000459929 3657 ntTSL 513.13□□□□□ -0.314e-6■■■■■ 34.4
SF3B1O75533 MED23-204ENST00000368060 4446 ntAPPRIS ALT1 TSL 1 (best) BASIC10.55□□□□□ -0.724e-6■■■■■ 34.4
SF3B1O75533 MED23-205ENST00000368068 5233 ntAPPRIS P4 TSL 1 (best) BASIC10.55□□□□□ -0.724e-6■■■■■ 34.4
SF3B1O75533 KDM4B-209ENST00000592159 411 ntTSL 310.18□□□□□ -0.784e-6■■■■■ 34.4
SF3B1O75533 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.41□□□□□ -1.224e-6■■■■■ 34.4
SF3B1O75533 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.24□□□□□ -1.574e-6■■■■■ 34.4
SF3B1O75533 MTHFR-210ENST00000641407 2387 ntBASIC15.52■□□□□ 0.083e-6■■■■■ 34.4
SF3B1O75533 MTHFR-216ENST00000641805 2945 nt14.55□□□□□ -0.083e-6■■■■■ 34.4
SF3B1O75533 MTHFR-212ENST00000641446 2820 nt14.04□□□□□ -0.163e-6■■■■■ 34.4
SF3B1O75533 MTHFR-215ENST00000641759 2454 nt12.87□□□□□ -0.353e-6■■■■■ 34.4
SF3B1O75533 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.363e-6■■■■■ 34.4
SF3B1O75533 MTHFR-202ENST00000376583 7044 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.43e-6■■■■■ 34.4
SF3B1O75533 MTHFR-214ENST00000641747 3227 nt11.94□□□□□ -0.53e-6■■■■■ 34.4
SF3B1O75533 MTHFR-203ENST00000376585 8094 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.513e-6■■■■■ 34.4
SF3B1O75533 MTHFR-204ENST00000376590 7094 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.513e-6■■■■■ 34.4
SF3B1O75533 GLUL-210ENST00000484996 1369 ntTSL 322.51■■□□□ 1.199e-10■■■■■ 34.4
SF3B1O75533 RNF44-204ENST00000506378 848 ntTSL 218.86■□□□□ 0.619e-10■■■■■ 34.4
SF3B1O75533 RNF44-205ENST00000508478 662 ntTSL 317.64■□□□□ 0.419e-10■■■■■ 34.4
SF3B1O75533 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.29e-10■■■■■ 34.4
SF3B1O75533 GRIPAP1-211ENST00000619107 904 ntTSL 514.28□□□□□ -0.129e-10■■■■■ 34.4
SF3B1O75533 GLUL-211ENST00000489818 683 ntTSL 311.1□□□□□ -0.639e-10■■■■■ 34.4
SF3B1O75533 GLUL-206ENST00000462444 793 ntTSL 29.91□□□□□ -0.829e-10■■■■■ 34.4
SF3B1O75533 GLUL-208ENST00000475808 868 ntTSL 29.76□□□□□ -0.859e-10■■■■■ 34.4
SF3B1O75533 GLUL-209ENST00000480604 908 ntTSL 58.59□□□□□ -1.039e-10■■■■■ 34.4
SF3B1O75533 GTSF1-208ENST00000552395 671 ntTSL 58.58□□□□□ -1.049e-10■■■■■ 34.4
SF3B1O75533 GRIPAP1-205ENST00000488361 653 ntTSL 56.76□□□□□ -1.339e-10■■■■■ 34.4
SF3B1O75533 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.349e-10■■■■■ 34.4
SF3B1O75533 GTSF1-204ENST00000546931 902 ntTSL 56.22□□□□□ -1.419e-10■■■■■ 34.4
SF3B1O75533 GTSF1-202ENST00000546575 458 ntTSL 24.72□□□□□ -1.659e-10■■■■■ 34.4
SF3B1O75533 GTSF1-207ENST00000552336 520 ntTSL 32.31□□□□□ -2.049e-10■■■■■ 34.4
SF3B1O75533 RBM3-206ENST00000485213 947 ntTSL 220.27■□□□□ 0.832e-6■■■■■ 34.4
SF3B1O75533 RBM3-207ENST00000488216 835 ntTSL 317.41■□□□□ 0.382e-6■■■■■ 34.4
SF3B1O75533 TMEM63A-201ENST00000366835 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.653e-6■■■■■ 34.4
SF3B1O75533 RIPOR3-203ENST00000462493 2698 ntTSL 216.47■□□□□ 0.232e-6■■■■■ 34.3
SF3B1O75533 TMEM267-206ENST00000512085 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.588e-8■■■■■ 34.3
Retrieved 100 of 46,956 protein–RNA pairs in 3545.3 ms