RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 AEBP2Q6ZN18 517 aaPredicted RBP34.66■■■■□ 3.14
SS18-214ENST00000580003 CHIC1Q5VXU3 224 aa33.92■■■■□ 3.02
SS18-214ENST00000580003 PHF23Q9BUL5 403 aaPredicted RBP29.78■■■□□ 2.36
SS18-214ENST00000580003 SENP3Q9H4L4 574 aaPredicted RBP29.51■■■□□ 2.31
SS18-214ENST00000580003 PLPPR3Q6T4P5 718 aa27.59■■■□□ 2.01
SS18-214ENST00000580003 FOXD1Q16676 465 aa27.32■■□□□ 1.96
SS18-214ENST00000580003 ADRA2BP18089 450 aa26.29■■□□□ 1.8
SS18-214ENST00000580003 PPP6R1Q9UPN7 881 aa26.27■■□□□ 1.8
SS18-214ENST00000580003 PIAS4Q8N2W9 510 aaPredicted RBP25.83■■□□□ 1.73
SS18-214ENST00000580003 MSH5O43196 834 aa25.26■■□□□ 1.63
SS18-214ENST00000580003 PPP4R3CPQ6ZMV5 832 aa24.3■■□□□ 1.48
SS18-214ENST00000580003 SCAF1Q9H7N4 1312 aaKnown RBP24.15■■□□□ 1.46
SS18-214ENST00000580003 MAPK8IP2Q13387 824 aaPredicted RBP23.83■■□□□ 1.41
SS18-214ENST00000580003 NCBP3Q53F19 620 aaKnown RBP23.74■■□□□ 1.39
SS18-214ENST00000580003 KCNA4P22459 653 aa23.72■■□□□ 1.39
SS18-214ENST00000580003 CNKSR2Q8WXI2 1034 aa23.63■■□□□ 1.37
SS18-214ENST00000580003 DMRT2Q9Y5R5 561 aa23.52■■□□□ 1.36
SS18-214ENST00000580003 NPM3O75607 178 aaKnown RBP23.3■■□□□ 1.32
SS18-214ENST00000580003 RNF216Q9NWF9 866 aaPredicted RBP23.16■■□□□ 1.3
SS18-214ENST00000580003 HOXD11P31277 338 aaPredicted RBP23.03■■□□□ 1.28
SS18-214ENST00000580003 POTEDQ86YR6 584 aa22.92■■□□□ 1.26
SS18-214ENST00000580003 SLC4A1APQ9BWU0 796 aaKnown RBP22.64■■□□□ 1.21
SS18-214ENST00000580003 DCAF8L1A6NGE4 600 aa22.59■■□□□ 1.21
SS18-214ENST00000580003 DNAJC5BQ9UF47 199 aa22.59■■□□□ 1.21
SS18-214ENST00000580003 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.02■■□□□ 1.12
SS18-214ENST00000580003 EHMT2Q96KQ7 1210 aa22.01■■□□□ 1.11
SS18-214ENST00000580003 SLC4A2P04920 1241 aa21.96■■□□□ 1.11
SS18-214ENST00000580003 FOXD4L1Q9NU39 408 aa21.87■■□□□ 1.09
SS18-214ENST00000580003 ZBTB22O15209 634 aa21.78■■□□□ 1.08
SS18-214ENST00000580003 CSRNP3Q8WYN3 585 aa21.7■■□□□ 1.06
SS18-214ENST00000580003 RNF39Q9H2S5 420 aa21.59■■□□□ 1.05
SS18-214ENST00000580003 U3KPZ7 1027 aaPredicted RBP21.59■■□□□ 1.05
SS18-214ENST00000580003 MYCNP04198 464 aaPredicted RBP21.58■■□□□ 1.05
SS18-214ENST00000580003 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.42■■□□□ 1.02
SS18-214ENST00000580003 HNRNPUL2Q1KMD3 747 aaKnown RBP21.42■■□□□ 1.02
SS18-214ENST00000580003 C1QBPQ07021 282 aaKnown RBP21.38■■□□□ 1.01
SS18-214ENST00000580003 SAMD1Q6SPF0 538 aaPredicted RBP21.32■■□□□ 1
SS18-214ENST00000580003 APLP2Q06481 763 aa21.23■□□□□ 0.99
SS18-214ENST00000580003 ATXN8OSP0DMR3 200 aa21.11■□□□□ 0.97
SS18-214ENST00000580003 CACNB1Q02641 598 aaPredicted RBP21.09■□□□□ 0.97
SS18-214ENST00000580003 SPINK5Q9NQ38 1064 aaPredicted RBP20.99■□□□□ 0.95
SS18-214ENST00000580003 CAPN15O75808 1086 aa20.97■□□□□ 0.95
SS18-214ENST00000580003 ATF5Q9Y2D1 282 aaPredicted RBP20.91■□□□□ 0.94
SS18-214ENST00000580003 TRHP20396 242 aaPredicted RBP20.88■□□□□ 0.93
SS18-214ENST00000580003 ZNF219Q9P2Y4 722 aaPredicted RBP20.88■□□□□ 0.93
SS18-214ENST00000580003 ABCB7O75027 752 aa20.55■□□□□ 0.88
SS18-214ENST00000580003 DSG3P32926 999 aa20.55■□□□□ 0.88
SS18-214ENST00000580003 POLA2Q14181 598 aa20.51■□□□□ 0.87
SS18-214ENST00000580003 ZBTB12Q9Y330 459 aaPredicted RBP20.23■□□□□ 0.83
SS18-214ENST00000580003 FBLN2P98095 1184 aa20.17■□□□□ 0.82
SS18-214ENST00000580003 MKRN4PQ13434 485 aaPredicted RBP20.01■□□□□ 0.79
SS18-214ENST00000580003 OSCARQ8IYS5 282 aa19.8■□□□□ 0.76
SS18-214ENST00000580003 FKBP8Q14318 412 aa19.68■□□□□ 0.74
SS18-214ENST00000580003 RBM42Q9BTD8 480 aaKnown RBP19.67■□□□□ 0.74
SS18-214ENST00000580003 SPDYE2BA6NHP3 402 aa19.65■□□□□ 0.74
SS18-214ENST00000580003 SPDYE6P0CI01 402 aa19.65■□□□□ 0.74
SS18-214ENST00000580003 SPDYE2Q495Y8 402 aa19.65■□□□□ 0.74
SS18-214ENST00000580003 SPDYE4A6NLX3 237 aa19.64■□□□□ 0.73
SS18-214ENST00000580003 ZNF692Q9BU19 519 aaPredicted RBP19.58■□□□□ 0.72
SS18-214ENST00000580003 SSUH2Q9Y2M2 353 aa19.45■□□□□ 0.7
SS18-214ENST00000580003 AKT1S1Q96B36 256 aa19.4■□□□□ 0.7
SS18-214ENST00000580003 PABPN1Q86U42 306 aaKnown RBP eCLIP19.31■□□□□ 0.68
SS18-214ENST00000580003 PROM2Q8N271 834 aa19.25■□□□□ 0.67
SS18-214ENST00000580003 REM2Q8IYK8 340 aaPredicted RBP19.19■□□□□ 0.66
SS18-214ENST00000580003 SPDYE1Q8NFV5 336 aaPredicted RBP19.09■□□□□ 0.65
SS18-214ENST00000580003 STAG3Q9UJ98 1225 aa19.04■□□□□ 0.64
SS18-214ENST00000580003 FBXO3Q9UK99 471 aa19.02■□□□□ 0.64
SS18-214ENST00000580003 CLEC11AQ9Y240 323 aa19■□□□□ 0.63
SS18-214ENST00000580003 PITPNM1O00562 1244 aa18.96■□□□□ 0.63
SS18-214ENST00000580003 PRR29P0C7W0 189 aa18.83■□□□□ 0.6
SS18-214ENST00000580003 CHRDL2Q6WN34 429 aa18.79■□□□□ 0.6
SS18-214ENST00000580003 VASPP50552 380 aaPredicted RBP18.71■□□□□ 0.59
SS18-214ENST00000580003 MIER1Q8N108 512 aa18.66■□□□□ 0.58
SS18-214ENST00000580003 PLCD3Q8N3E9 789 aa18.65■□□□□ 0.58
SS18-214ENST00000580003 PLEKHG5O94827 1062 aa18.63■□□□□ 0.57
SS18-214ENST00000580003 FXR2P51116 673 aaKnown RBP eCLIP18.59■□□□□ 0.57
SS18-214ENST00000580003 PIP4P2Q8N4L2 257 aa18.54■□□□□ 0.56
SS18-214ENST00000580003 CREBZFQ9NS37 354 aa18.54■□□□□ 0.56
SS18-214ENST00000580003 PRKAR2AP13861 404 aaKnown RBP18.51■□□□□ 0.55
SS18-214ENST00000580003 CHADLQ6NUI6 762 aa18.49■□□□□ 0.55
SS18-214ENST00000580003 KLHL34Q8N239 644 aa18.45■□□□□ 0.54
SS18-214ENST00000580003 ZBTB47Q9UFB7 747 aaPredicted RBP18.45■□□□□ 0.54
SS18-214ENST00000580003 IFNLR1Q8IU57 520 aaPredicted RBP18.42■□□□□ 0.54
SS18-214ENST00000580003 FARP1Q9Y4F1 1045 aaPredicted RBP18.33■□□□□ 0.52
SS18-214ENST00000580003 NPM1P06748 294 aaKnown RBP eCLIP18.32■□□□□ 0.52
SS18-214ENST00000580003 MNX1P50219 401 aaPredicted RBP18.3■□□□□ 0.52
SS18-214ENST00000580003 SPOCK2Q92563 424 aa18.27■□□□□ 0.52
SS18-214ENST00000580003 POTEHQ6S545 545 aa18.18■□□□□ 0.5
SS18-214ENST00000580003 NUBP1P53384 320 aa18.11■□□□□ 0.49
SS18-214ENST00000580003 RASEFQ8IZ41 740 aa18.04■□□□□ 0.48
SS18-214ENST00000580003 FAM212AQ96EL1 285 aa18.04■□□□□ 0.48
SS18-214ENST00000580003 PAK3O75914 559 aaPredicted RBP18.02■□□□□ 0.48
SS18-214ENST00000580003 DCAF8Q5TAQ9 597 aa18.01■□□□□ 0.47
SS18-214ENST00000580003 HAX1O00165 279 aa18■□□□□ 0.47
SS18-214ENST00000580003 CIZ1Q9ULV3 898 aaPredicted RBP18■□□□□ 0.47
SS18-214ENST00000580003 GSE1Q14687 1217 aa17.99■□□□□ 0.47
SS18-214ENST00000580003 CD44P16070 742 aaKnown RBP17.98■□□□□ 0.47
SS18-214ENST00000580003 AMER1Q5JTC6 1135 aaPredicted RBP17.98■□□□□ 0.47
SS18-214ENST00000580003 TSPYL2Q9H2G4 693 aaPredicted RBP17.98■□□□□ 0.47
SS18-214ENST00000580003 C19orf67A6NJJ6 358 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms