Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FDPS-215ENST00000490140 680 ntTSL 213.09□□□□□ -0.314e-6■■■■■ 34.5
SF3B1O75533 TANK-215ENST00000457887 762 ntTSL 513.07□□□□□ -0.324e-6■■■■■ 34.5
SF3B1O75533 EIF5-205ENST00000558506 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.324e-9■■■■■ 34.5
SF3B1O75533 CEP57L1-204ENST00000407272 1947 ntTSL 5 BASIC13.04□□□□□ -0.324e-6■■■■■ 34.5
SF3B1O75533 AGPAT1-204ENST00000395496 2103 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.324e-7■■■■■ 34.5
SF3B1O75533 CAPN1-204ENST00000526468 690 ntTSL 313□□□□□ -0.334e-6■■■■■ 34.5
SF3B1O75533 PPP4R1-219ENST00000581250 578 ntTSL 413□□□□□ -0.334e-6■■■■■ 34.5
SF3B1O75533 ACTN4-206ENST00000489451 654 ntTSL 312.98□□□□□ -0.335e-13■■■■■ 34.5
SF3B1O75533 POC5-213ENST00000514838 1984 ntTSL 5 BASIC12.98□□□□□ -0.334e-6■■■■■ 34.5
SF3B1O75533 CEP57L1-209ENST00000519286 965 ntTSL 512.97□□□□□ -0.334e-6■■■■■ 34.5
SF3B1O75533 NBPF12-208ENST00000617931 7061 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.384e-7■■■■■ 34.5
SF3B1O75533 LDAH-207ENST00000432947 548 ntTSL 412.7□□□□□ -0.385e-11■■■■■ 34.5
SF3B1O75533 ST13-203ENST00000413424 630 ntTSL 312.69□□□□□ -0.384e-6■■■■■ 34.5
SF3B1O75533 AGPAT1-206ENST00000395499 2496 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.384e-7■■■■■ 34.5
SF3B1O75533 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.384e-8■■■■■ 34.5
SF3B1O75533 SPEN-205ENST00000487496 543 ntTSL 1 (best)12.55□□□□□ -0.44e-9■■■■■ 34.5
SF3B1O75533 APTX-215ENST00000468275 1455 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.45e-11■■■■■ 34.5
SF3B1O75533 INSIG1-206ENST00000476756 1320 ntTSL 212.51□□□□□ -0.414e-7■■■■■ 34.5
SF3B1O75533 NUPL2-209ENST00000487595 623 ntTSL 312.5□□□□□ -0.414e-10■■■■■ 34.5
SF3B1O75533 APTX-208ENST00000436040 2168 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.425e-11■■■■■ 34.5
SF3B1O75533 SPG11-201ENST00000261866 7774 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.434e-8■■■■■ 34.5
SF3B1O75533 NAT9-207ENST00000579218 583 ntTSL 512.38□□□□□ -0.434e-9■■■■■ 34.5
SF3B1O75533 METTL17-204ENST00000553441 635 ntTSL 212.37□□□□□ -0.434e-6■■■■■ 34.5
SF3B1O75533 UBN1-205ENST00000586716 937 ntTSL 312.3□□□□□ -0.444e-9■■■■■ 34.5
SF3B1O75533 ILK-215ENST00000537806 1801 ntTSL 5 BASIC12.26□□□□□ -0.454e-7■■■■■ 34.5
SF3B1O75533 SAT1-209ENST00000489394 1135 ntTSL 212.25□□□□□ -0.454e-9■■■■■ 34.5
SF3B1O75533 ZNF611-211ENST00000598639 738 ntTSL 312.25□□□□□ -0.454e-7■■■■■ 34.5
SF3B1O75533 METTL17-210ENST00000554751 556 ntTSL 512.24□□□□□ -0.454e-6■■■■■ 34.5
SF3B1O75533 PPP4R1-218ENST00000580745 535 ntTSL 412.23□□□□□ -0.454e-6■■■■■ 34.5
SF3B1O75533 RPLP2-205ENST00000527517 646 ntTSL 212.2□□□□□ -0.464e-6■■■■■ 34.5
SF3B1O75533 GNAS-245ENST00000487862 1782 ntTSL 212.19□□□□□ -0.464e-6■■■■■ 34.5
SF3B1O75533 PRMT5-211ENST00000553641 800 ntTSL 312.15□□□□□ -0.464e-7■■■■■ 34.5
SF3B1O75533 AC015688.5-201ENST00000584605 603 ntAPPRIS P5 TSL 2 BASIC12.09□□□□□ -0.474e-7■■■■■ 34.5
SF3B1O75533 ARL6IP4-202ENST00000357866 546 ntTSL 1 (best) BASIC12.04□□□□□ -0.484e-8■■■■■ 34.5
SF3B1O75533 APTX-230ENST00000494649 2099 ntTSL 1 (best)12.03□□□□□ -0.485e-11■■■■■ 34.5
SF3B1O75533 PPP4R1-208ENST00000578178 468 ntTSL 411.98□□□□□ -0.494e-6■■■■■ 34.5
SF3B1O75533 APTX-223ENST00000479656 1881 ntTSL 1 (best)11.83□□□□□ -0.525e-11■■■■■ 34.5
SF3B1O75533 CSE1L-201ENST00000262982 3553 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.524e-6■■■■■ 34.5
SF3B1O75533 APTX-212ENST00000464632 679 ntTSL 1 (best)11.8□□□□□ -0.525e-11■■■■■ 34.5
SF3B1O75533 APTX-222ENST00000478279 684 ntTSL 1 (best)11.8□□□□□ -0.525e-11■■■■■ 34.5
SF3B1O75533 LINC00958-201ENST00000504230 1558 ntTSL 2 BASIC11.7□□□□□ -0.544e-8■■■■■ 34.5
SF3B1O75533 CSE1L-202ENST00000396192 3459 ntTSL 5 BASIC11.57□□□□□ -0.564e-6■■■■■ 34.5
SF3B1O75533 RPL29-201ENST00000294189 723 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.563e-16■■■■■ 34.5
SF3B1O75533 ST13-201ENST00000216218 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.564e-6■■■■■ 34.5
SF3B1O75533 ILK-210ENST00000528995 1559 ntTSL 2 BASIC11.54□□□□□ -0.564e-7■■■■■ 34.5
SF3B1O75533 METTL17-225ENST00000557701 552 ntTSL 211.51□□□□□ -0.574e-6■■■■■ 34.5
SF3B1O75533 ILK-214ENST00000534706 790 ntTSL 511.34□□□□□ -0.594e-7■■■■■ 34.5
SF3B1O75533 PPP4R1-224ENST00000583092 554 ntTSL 411.34□□□□□ -0.594e-6■■■■■ 34.5
SF3B1O75533 ILK-202ENST00000396751 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.64e-7■■■■■ 34.5
SF3B1O75533 RHOA-203ENST00000422781 961 ntTSL 2 BASIC11.32□□□□□ -0.64e-7■■■■■ 34.5
SF3B1O75533 SNRPA1-211ENST00000560433 2440 ntTSL 211.29□□□□□ -0.64e-7■■■■■ 34.5
SF3B1O75533 AC090559.2-201ENST00000366360 430 ntTSL 5 BASIC11.26□□□□□ -0.614e-7■■■■■ 34.5
SF3B1O75533 PPP4R1-220ENST00000581835 379 ntTSL 211.21□□□□□ -0.614e-6■■■■■ 34.5
SF3B1O75533 STARD3-206ENST00000481171 3451 ntTSL 211.16□□□□□ -0.624e-7■■■■■ 34.5
SF3B1O75533 CEP57L1-219ENST00000522490 861 ntTSL 311.09□□□□□ -0.634e-6■■■■■ 34.5
SF3B1O75533 LIG1-209ENST00000596104 531 ntTSL 311.07□□□□□ -0.644e-6■■■■■ 34.5
SF3B1O75533 ILK-206ENST00000526318 596 ntTSL 311.03□□□□□ -0.644e-7■■■■■ 34.5
SF3B1O75533 LARP4-208ENST00000520064 2068 ntTSL 511.02□□□□□ -0.654e-6■■■■■ 34.5
SF3B1O75533 APTX-224ENST00000480031 674 ntTSL 511□□□□□ -0.655e-11■■■■■ 34.5
SF3B1O75533 ZNF611-207ENST00000596702 538 ntTSL 4 BASIC10.99□□□□□ -0.654e-7■■■■■ 34.5
SF3B1O75533 ARPC3-201ENST00000228825 1014 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.664e-7■■■■■ 34.5
SF3B1O75533 CASP2-206ENST00000493642 2166 ntTSL 1 (best)10.81□□□□□ -0.684e-6■■■■■ 34.5
SF3B1O75533 AC002384.1-201ENST00000490162 429 ntTSL 3 BASIC10.81□□□□□ -0.684e-6■■■■■ 34.5
SF3B1O75533 PRMT5-217ENST00000554910 577 ntTSL 410.72□□□□□ -0.694e-7■■■■■ 34.5
SF3B1O75533 POU2F1-205ENST00000420254 1896 ntTSL 510.69□□□□□ -0.74e-6■■■■■ 34.5
SF3B1O75533 AC015688.5-202ENST00000579290 532 ntAPPRIS ALT2 TSL 210.67□□□□□ -0.74e-7■■■■■ 34.5
SF3B1O75533 APTX-205ENST00000379819 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.715e-11■■■■■ 34.5
SF3B1O75533 APTX-217ENST00000473221 687 ntTSL 210.61□□□□□ -0.715e-11■■■■■ 34.5
SF3B1O75533 CASP2-204ENST00000472067 5769 ntTSL 210.57□□□□□ -0.724e-6■■■■■ 34.5
SF3B1O75533 UBAC1-205ENST00000486258 243 ntTSL 310.52□□□□□ -0.734e-6■■■■■ 34.5
SF3B1O75533 POC5-211ENST00000510798 1524 ntTSL 2 BASIC10.44□□□□□ -0.744e-6■■■■■ 34.5
SF3B1O75533 DNAJC2-207ENST00000464253 1809 ntTSL 1 (best)10.44□□□□□ -0.744e-6■■■■■ 34.5
SF3B1O75533 RPL29-206ENST00000481629 880 ntTSL 2 BASIC10.43□□□□□ -0.746e-16■■■■■ 34.5
SF3B1O75533 CEP57L1-207ENST00000518853 813 ntTSL 310.37□□□□□ -0.754e-6■■■■■ 34.5
SF3B1O75533 ZMYM2-209ENST00000494061 1063 ntTSL 210.35□□□□□ -0.754e-7■■■■■ 34.5
SF3B1O75533 CELF1-221ENST00000543178 576 ntTSL 410.31□□□□□ -0.764e-7■■■■■ 34.5
SF3B1O75533 APTX-219ENST00000474658 952 ntTSL 510.3□□□□□ -0.765e-11■■■■■ 34.5
SF3B1O75533 APTX-207ENST00000397172 1740 ntTSL 1 (best) BASIC10.24□□□□□ -0.775e-11■■■■■ 34.5
SF3B1O75533 RPS6-202ENST00000380381 892 ntTSL 2 BASIC10.22□□□□□ -0.774e-7■■■■■ 34.5
SF3B1O75533 ZNF611-209ENST00000597343 860 ntTSL 510.22□□□□□ -0.774e-7■■■■■ 34.5
SF3B1O75533 POC5-203ENST00000446329 1728 ntTSL 1 (best) BASIC10.18□□□□□ -0.784e-6■■■■■ 34.5
SF3B1O75533 RAB3GAP2-203ENST00000462353 1906 ntTSL 1 (best)10.12□□□□□ -0.794e-8■■■■■ 34.5
SF3B1O75533 AGPAT1-208ENST00000490711 2448 ntTSL 210.11□□□□□ -0.794e-7■■■■■ 34.5
SF3B1O75533 SUZ12P1-206ENST00000582557 1560 ntTSL 1 (best)10.09□□□□□ -0.794e-6■■■■■ 34.5
SF3B1O75533 CEP57L1-205ENST00000517392 2771 ntAPPRIS P3 TSL 2 BASIC10.04□□□□□ -0.84e-6■■■■■ 34.5
SF3B1O75533 HAT1-206ENST00000494601 3845 ntTSL 1 (best)10.02□□□□□ -0.84e-6■■■■■ 34.5
SF3B1O75533 ILK-209ENST00000528784 947 ntTSL 29.95□□□□□ -0.824e-7■■■■■ 34.5
SF3B1O75533 CELF1-212ENST00000528538 581 ntTSL 49.94□□□□□ -0.824e-7■■■■■ 34.5
SF3B1O75533 MAN2A2-226ENST00000560926 569 ntTSL 49.86□□□□□ -0.834e-7■■■■■ 34.5
SF3B1O75533 CEP57L1-222ENST00000523209 866 ntTSL 59.85□□□□□ -0.834e-6■■■■■ 34.5
SF3B1O75533 TANK-207ENST00000429217 762 ntTSL 59.84□□□□□ -0.834e-6■■■■■ 34.5
SF3B1O75533 TANK-216ENST00000461338 674 ntTSL 39.84□□□□□ -0.834e-6■■■■■ 34.5
SF3B1O75533 RPL29-205ENST00000480306 719 ntTSL 29.81□□□□□ -0.843e-16■■■■■ 34.5
SF3B1O75533 GTF3C1-210ENST00000569394 566 ntTSL 39.81□□□□□ -0.844e-6■■■■■ 34.5
SF3B1O75533 MAN2A2-219ENST00000560147 492 ntTSL 49.78□□□□□ -0.844e-7■■■■■ 34.5
SF3B1O75533 METTL17-205ENST00000553536 824 ntTSL 29.66□□□□□ -0.864e-6■■■■■ 34.5
SF3B1O75533 HAT1-204ENST00000457761 1642 ntTSL 1 (best)9.62□□□□□ -0.874e-6■■■■■ 34.5
SF3B1O75533 RPS6-204ENST00000380394 1387 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.894e-7■■■■■ 34.5
SF3B1O75533 CEP57L1-202ENST00000368968 1649 ntAPPRIS ALT2 TSL 2 BASIC9.51□□□□□ -0.894e-6■■■■■ 34.5
SF3B1O75533 ZNF611-219ENST00000602162 3299 ntTSL 2 BASIC9.37□□□□□ -0.914e-7■■■■■ 34.5
Retrieved 100 of 46,956 protein–RNA pairs in 3651.5 ms