Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4S1Q9Y587 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
AP4S1Q9Y587 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 MIR4281-201ENST00000580852 62 ntBASIC20.29■□□□□ 0.84
AP4S1Q9Y587 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4S1Q9Y587 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 FEM1AP1-201ENST00000431297 1995 ntBASIC20.28■□□□□ 0.84
AP4S1Q9Y587 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
AP4S1Q9Y587 RNF126P1-201ENST00000567452 1320 ntBASIC20.27■□□□□ 0.84
AP4S1Q9Y587 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.27■□□□□ 0.84
AP4S1Q9Y587 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
AP4S1Q9Y587 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 DUX4L4-201ENST00000566884 1269 ntBASIC20.26■□□□□ 0.83
AP4S1Q9Y587 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 THA1P-201ENST00000590384 1145 ntBASIC20.26■□□□□ 0.83
AP4S1Q9Y587 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
AP4S1Q9Y587 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms