Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC33.57■■■□□ 2.96
CDK11AQ9UQ88 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 AP004607.7-201ENST00000527152 1677 ntBASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC33.56■■■□□ 2.96
CDK11AQ9UQ88 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 PREB-202ENST00000406567 1910 ntTSL 5 BASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 AC069152.1-201ENST00000438030 544 ntBASIC33.55■■■□□ 2.96
CDK11AQ9UQ88 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC33.54■■■□□ 2.96
CDK11AQ9UQ88 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC33.54■■■□□ 2.96
CDK11AQ9UQ88 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
CDK11AQ9UQ88 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
CDK11AQ9UQ88 SLC7A5P1-201ENST00000568957 537 ntBASIC33.54■■■□□ 2.96
CDK11AQ9UQ88 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC33.54■■■□□ 2.96
CDK11AQ9UQ88 AC133041.1-202ENST00000642053 222 ntBASIC33.54■■■□□ 2.96
CDK11AQ9UQ88 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 APTR-203ENST00000430801 583 ntTSL 5 BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC33.53■■■□□ 2.96
CDK11AQ9UQ88 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC33.52■■■□□ 2.96
CDK11AQ9UQ88 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
CDK11AQ9UQ88 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC33.52■■■□□ 2.96
CDK11AQ9UQ88 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC33.52■■■□□ 2.96
CDK11AQ9UQ88 AL034346.1-201ENST00000568244 1277 ntBASIC33.52■■■□□ 2.96
CDK11AQ9UQ88 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
CDK11AQ9UQ88 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC33.51■■■□□ 2.95
CDK11AQ9UQ88 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC33.51■■■□□ 2.95
CDK11AQ9UQ88 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC33.51■■■□□ 2.95
CDK11AQ9UQ88 AC105036.2-201ENST00000569468 176 ntBASIC33.51■■■□□ 2.95
CDK11AQ9UQ88 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC33.51■■■□□ 2.95
CDK11AQ9UQ88 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
CDK11AQ9UQ88 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
CDK11AQ9UQ88 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
CDK11AQ9UQ88 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 AC013268.1-206ENST00000638368 961 ntBASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 AC112229.1-201ENST00000639295 961 ntBASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
CDK11AQ9UQ88 OR7E47P-201ENST00000546390 1422 ntBASIC33.48■■■□□ 2.95
CDK11AQ9UQ88 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
CDK11AQ9UQ88 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC33.48■■■□□ 2.95
CDK11AQ9UQ88 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC33.48■■■□□ 2.95
CDK11AQ9UQ88 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC33.47■■■□□ 2.95
CDK11AQ9UQ88 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
CDK11AQ9UQ88 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC33.47■■■□□ 2.95
CDK11AQ9UQ88 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
CDK11AQ9UQ88 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC33.47■■■□□ 2.95
CDK11AQ9UQ88 EEF1DP3-203ENST00000566025 782 ntBASIC33.47■■■□□ 2.95
CDK11AQ9UQ88 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
CDK11AQ9UQ88 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC33.46■■■□□ 2.95
CDK11AQ9UQ88 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
CDK11AQ9UQ88 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
CDK11AQ9UQ88 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC33.45■■■□□ 2.95
CDK11AQ9UQ88 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC33.45■■■□□ 2.95
CDK11AQ9UQ88 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
CDK11AQ9UQ88 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC33.45■■■□□ 2.95
CDK11AQ9UQ88 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
CDK11AQ9UQ88 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC33.45■■■□□ 2.95
CDK11AQ9UQ88 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC33.45■■■□□ 2.95
CDK11AQ9UQ88 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.94
CDK11AQ9UQ88 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 UQCRFS1P1-201ENST00000435169 820 ntBASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 TERF1P5-201ENST00000477545 1207 ntBASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC33.44■■■□□ 2.94
CDK11AQ9UQ88 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
CDK11AQ9UQ88 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
CDK11AQ9UQ88 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC33.43■■■□□ 2.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms