Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNRNP40Q96DI7 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SNRNP40Q96DI7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SNRNP40Q96DI7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 KRT18P20-201ENST00000548986 1279 ntBASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SNRNP40Q96DI7 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 AC010141.2-201ENST00000452426 721 ntBASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 AC138907.5-202ENST00000569484 235 ntBASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNRNP40Q96DI7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 AC093827.2-201ENST00000512654 315 ntBASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 AC008687.6-201ENST00000596318 630 ntBASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.45■□□□□ 0.7
SNRNP40Q96DI7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 POU5F1P3-201ENST00000428824 1078 ntBASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 MIR4758-201ENST00000577688 71 ntBASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SNRNP40Q96DI7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.43■□□□□ 0.7
SNRNP40Q96DI7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 AC013268.1-206ENST00000638368 961 ntBASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 AC112229.1-201ENST00000639295 961 ntBASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.42■□□□□ 0.7
SNRNP40Q96DI7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 RNA5SP413-201ENST00000516373 109 ntBASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 ITM2C-210ENST00000620962 501 ntBASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.41■□□□□ 0.7
SNRNP40Q96DI7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms