Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28AQ8IWP9 AC005082.1-201ENST00000413042 2259 ntBASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28AQ8IWP9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 AFG3L1P-217ENST00000557444 2447 ntBASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC28AQ8IWP9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 LTB4R2-202ENST00000528054 3092 ntBASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC28AQ8IWP9 AC098818.2-201ENST00000564925 2320 ntBASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 HLA-L-211ENST00000482052 1765 ntBASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28AQ8IWP9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
CCDC28AQ8IWP9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.89■□□□□ 0.46
CCDC28AQ8IWP9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CCDC28AQ8IWP9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
CCDC28AQ8IWP9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28AQ8IWP9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms