Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 ASB1-202ENST00000409297 878 ntTSL 5 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 SNX5-217ENST00000606557 1087 ntBASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PDLIM3Q53GG5 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 SRD5A1P1-201ENST00000442297 786 ntBASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 SLC47A1P1-202ENST00000449666 945 ntBASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.74■□□□□ 0.43
PDLIM3Q53GG5 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 AC080038.3-201ENST00000623346 1952 ntBASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 CLTA-210ENST00000540080 989 ntTSL 2 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PDLIM3Q53GG5 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 FP325331.1-202ENST00000623531 1380 ntBASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM3Q53GG5 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 AC034268.1-201ENST00000441047 882 ntBASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM3Q53GG5 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.7■□□□□ 0.42
PDLIM3Q53GG5 LINC01529-204ENST00000636474 1715 ntBASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms