Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF404Q494X3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF404Q494X3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF404Q494X3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF404Q494X3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF404Q494X3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF404Q494X3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF404Q494X3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF404Q494X3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF404Q494X3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
ZNF404Q494X3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF404Q494X3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
ZNF404Q494X3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF404Q494X3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.4■□□□□ 0.7
ZNF404Q494X3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.4■□□□□ 0.7
ZNF404Q494X3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.4■□□□□ 0.7
ZNF404Q494X3 AC092028.1-203ENST00000608262 953 ntBASIC19.4■□□□□ 0.7
ZNF404Q494X3 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF404Q494X3 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.39■□□□□ 0.7
ZNF404Q494X3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF404Q494X3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF404Q494X3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
ZNF404Q494X3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF404Q494X3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF404Q494X3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF404Q494X3 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF404Q494X3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF404Q494X3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF404Q494X3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF404Q494X3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.38■□□□□ 0.69
ZNF404Q494X3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF404Q494X3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF404Q494X3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
ZNF404Q494X3 AF106564.1-201ENST00000607058 2553 ntBASIC19.38■□□□□ 0.69
ZNF404Q494X3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 FEM1AP4-201ENST00000443167 1987 ntBASIC19.37■□□□□ 0.69
ZNF404Q494X3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 LINC01006-201ENST00000333319 2292 ntBASIC19.37■□□□□ 0.69
ZNF404Q494X3 Z98882.1-201ENST00000622160 2253 ntBASIC19.37■□□□□ 0.69
ZNF404Q494X3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF404Q494X3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ZNF404Q494X3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF404Q494X3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF404Q494X3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF404Q494X3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF404Q494X3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF404Q494X3 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF404Q494X3 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.36■□□□□ 0.69
ZNF404Q494X3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms