Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTCHD3Q3KNS1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 TSPY26P-201ENST00000476365 1326 ntBASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 AP005435.1-201ENST00000529293 1178 ntBASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 MIR5787-201ENST00000611784 55 ntBASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTCHD3Q3KNS1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTCHD3Q3KNS1 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 OXCT2P1-201ENST00000447263 1535 ntBASIC21.03■□□□□ 0.96
PTCHD3Q3KNS1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 AC087623.3-201ENST00000607047 1098 ntBASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 MIR6821-201ENST00000617625 74 ntBASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTCHD3Q3KNS1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 AC097381.1-201ENST00000429019 1296 ntBASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 OR7E47P-201ENST00000546390 1422 ntBASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTCHD3Q3KNS1 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 ANKRD20A6P-201ENST00000618763 204 ntBASIC21■□□□□ 0.95
PTCHD3Q3KNS1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
PTCHD3Q3KNS1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 IGHV3-19-201ENST00000521488 291 ntBASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms