Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.27■□□□□ 0.68
RAB40BQ12829 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAB40BQ12829 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.27■□□□□ 0.67
RAB40BQ12829 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RAB40BQ12829 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAB40BQ12829 AC103834.1-201ENST00000520383 144 ntBASIC19.26■□□□□ 0.67
RAB40BQ12829 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RAB40BQ12829 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
RAB40BQ12829 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RAB40BQ12829 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAB40BQ12829 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAB40BQ12829 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RAB40BQ12829 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RAB40BQ12829 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RAB40BQ12829 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.26■□□□□ 0.67
RAB40BQ12829 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAB40BQ12829 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 C17orf82-201ENST00000623772 1530 ntBASIC19.25■□□□□ 0.67
RAB40BQ12829 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.25■□□□□ 0.67
RAB40BQ12829 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.25■□□□□ 0.67
RAB40BQ12829 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.25■□□□□ 0.67
RAB40BQ12829 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 AC021242.3-201ENST00000607598 1377 ntBASIC19.25■□□□□ 0.67
RAB40BQ12829 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RAB40BQ12829 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RAB40BQ12829 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAB40BQ12829 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB40BQ12829 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB40BQ12829 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.24■□□□□ 0.67
RAB40BQ12829 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB40BQ12829 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB40BQ12829 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.24■□□□□ 0.67
RAB40BQ12829 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RAB40BQ12829 YBX1P4-201ENST00000392794 808 ntBASIC19.24■□□□□ 0.67
RAB40BQ12829 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RAB40BQ12829 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.24■□□□□ 0.67
RAB40BQ12829 AL499627.2-201ENST00000606283 725 ntBASIC19.24■□□□□ 0.67
RAB40BQ12829 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.24■□□□□ 0.67
RAB40BQ12829 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RAB40BQ12829 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RAB40BQ12829 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
RAB40BQ12829 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RAB40BQ12829 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RAB40BQ12829 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.24■□□□□ 0.67
RAB40BQ12829 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.23■□□□□ 0.67
RAB40BQ12829 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.23■□□□□ 0.67
RAB40BQ12829 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
RAB40BQ12829 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.23■□□□□ 0.67
RAB40BQ12829 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.23■□□□□ 0.67
RAB40BQ12829 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
RAB40BQ12829 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.23■□□□□ 0.67
RAB40BQ12829 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
RAB40BQ12829 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.23■□□□□ 0.67
RAB40BQ12829 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.23■□□□□ 0.67
RAB40BQ12829 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.23■□□□□ 0.67
RAB40BQ12829 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RAB40BQ12829 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RAB40BQ12829 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
RAB40BQ12829 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.22■□□□□ 0.67
RAB40BQ12829 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.22■□□□□ 0.67
RAB40BQ12829 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 OXCT2P1-201ENST00000447263 1535 ntBASIC19.22■□□□□ 0.67
RAB40BQ12829 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
RAB40BQ12829 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RAB40BQ12829 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
RAB40BQ12829 AC079089.2-201ENST00000531211 1277 ntBASIC19.22■□□□□ 0.67
RAB40BQ12829 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAB40BQ12829 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RAB40BQ12829 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.21■□□□□ 0.67
RAB40BQ12829 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.21■□□□□ 0.67
RAB40BQ12829 AC026471.6-201ENST00000622954 1905 ntBASIC19.21■□□□□ 0.67
RAB40BQ12829 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
RAB40BQ12829 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAB40BQ12829 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms