Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 AC144652.1-201ENST00000609974 1624 ntBASIC16.16■□□□□ 0.18
HLA-DQA1P01909 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DQA1P01909 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 FEM1AP1-201ENST00000431297 1995 ntBASIC16.15■□□□□ 0.18
HLA-DQA1P01909 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 HSD17B1P1-201ENST00000590052 955 ntBASIC16.15■□□□□ 0.18
HLA-DQA1P01909 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DQA1P01909 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.14■□□□□ 0.18
HLA-DQA1P01909 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 RP9P-202ENST00000450133 1212 ntBASIC16.14■□□□□ 0.17
HLA-DQA1P01909 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 AC093536.1-201ENST00000569153 554 ntBASIC16.14■□□□□ 0.17
HLA-DQA1P01909 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 AC007029.1-201ENST00000604183 313 ntBASIC16.14■□□□□ 0.17
HLA-DQA1P01909 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 RNF126P1-201ENST00000567452 1320 ntBASIC16.14■□□□□ 0.17
HLA-DQA1P01909 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DQA1P01909 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DQA1P01909 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 AC131274.2-201ENST00000580697 1507 ntBASIC16.12■□□□□ 0.17
HLA-DQA1P01909 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
HLA-DQA1P01909 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms