Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 TSPY26P-201ENST00000476365 1326 ntBASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 AC139530.1-201ENST00000575312 1977 ntBASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PCDHB3Q9Y5E6 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHB3Q9Y5E6 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHB3Q9Y5E6 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHB3Q9Y5E6 AC092053.2-201ENST00000640557 1818 ntBASIC21.08■□□□□ 0.96
PCDHB3Q9Y5E6 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHB3Q9Y5E6 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
PCDHB3Q9Y5E6 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHB3Q9Y5E6 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDHB3Q9Y5E6 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 C11orf96-202ENST00000528572 1834 ntBASIC21.06■□□□□ 0.96
PCDHB3Q9Y5E6 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 MIR572-201ENST00000384983 95 ntBASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 YBX1P1-201ENST00000445822 960 ntBASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 AC010525.1-201ENST00000585559 441 ntBASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 AL024507.2-201ENST00000606070 2574 ntBASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHB3Q9Y5E6 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms