Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCM2LQ9NUG4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.49■□□□□ 0.87
CCM2LQ9NUG4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 AC092666.2-201ENST00000613287 246 ntBASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 AL117332.1-201ENST00000622628 974 ntBASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCM2LQ9NUG4 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 Z98882.1-201ENST00000622160 2253 ntBASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 LINC01529-204ENST00000636474 1715 ntBASIC20.47■□□□□ 0.87
CCM2LQ9NUG4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 FEM1AP4-201ENST00000443167 1987 ntBASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCM2LQ9NUG4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
CCM2LQ9NUG4 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 AC010997.5-201ENST00000609182 354 ntBASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 AL157384.1-201ENST00000445995 2473 ntBASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 LINC01521-201ENST00000504184 1943 ntBASIC20.45■□□□□ 0.86
CCM2LQ9NUG4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 MIR3621-201ENST00000580529 85 ntBASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.44■□□□□ 0.86
CCM2LQ9NUG4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms