Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 TSPY13P-201ENST00000338964 914 ntBASIC19.22■□□□□ 0.67
CCDC58Q4VC31 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC58Q4VC31 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC58Q4VC31 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC58Q4VC31 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC58Q4VC31 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC58Q4VC31 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.18■□□□□ 0.66
CCDC58Q4VC31 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC58Q4VC31 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC58Q4VC31 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC58Q4VC31 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC58Q4VC31 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CCDC58Q4VC31 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms