Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
MSH2P43246 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH2P43246 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH2P43246 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH2P43246 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.9■■□□□ 1.1
MSH2P43246 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH2P43246 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH2P43246 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH2P43246 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
MSH2P43246 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
MSH2P43246 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
MSH2P43246 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH2P43246 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH2P43246 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MSH2P43246 AC005229.4-201ENST00000610085 2198 ntBASIC21.89■■□□□ 1.1
MSH2P43246 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
MSH2P43246 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
MSH2P43246 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
MSH2P43246 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.89■■□□□ 1.1
MSH2P43246 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.89■■□□□ 1.1
MSH2P43246 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
MSH2P43246 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.89■■□□□ 1.1
MSH2P43246 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
MSH2P43246 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH2P43246 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH2P43246 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
MSH2P43246 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH2P43246 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH2P43246 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH2P43246 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
MSH2P43246 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH2P43246 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH2P43246 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH2P43246 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH2P43246 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH2P43246 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH2P43246 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH2P43246 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH2P43246 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH2P43246 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
MSH2P43246 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH2P43246 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH2P43246 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH2P43246 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH2P43246 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
MSH2P43246 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH2P43246 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
MSH2P43246 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH2P43246 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH2P43246 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH2P43246 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH2P43246 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
MSH2P43246 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
MSH2P43246 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH2P43246 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
MSH2P43246 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
MSH2P43246 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH2P43246 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH2P43246 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH2P43246 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH2P43246 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
MSH2P43246 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH2P43246 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
MSH2P43246 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH2P43246 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.85■■□□□ 1.09
MSH2P43246 AL451085.2-201ENST00000605085 799 ntBASIC21.85■■□□□ 1.09
MSH2P43246 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
MSH2P43246 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
MSH2P43246 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH2P43246 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH2P43246 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.84■■□□□ 1.09
MSH2P43246 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH2P43246 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH2P43246 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH2P43246 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms