Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USF1P22415 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USF1P22415 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
USF1P22415 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.27■□□□□ 0.52
USF1P22415 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.27■□□□□ 0.52
USF1P22415 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.27■□□□□ 0.52
USF1P22415 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
USF1P22415 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
USF1P22415 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USF1P22415 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.27■□□□□ 0.51
USF1P22415 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USF1P22415 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USF1P22415 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 AC068473.5-201ENST00000616428 2072 ntBASIC18.26■□□□□ 0.51
USF1P22415 HLA-L-209ENST00000420110 1011 ntBASIC18.26■□□□□ 0.51
USF1P22415 AC010141.3-201ENST00000456659 717 ntBASIC18.26■□□□□ 0.51
USF1P22415 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.26■□□□□ 0.51
USF1P22415 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.26■□□□□ 0.51
USF1P22415 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.26■□□□□ 0.51
USF1P22415 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
USF1P22415 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
USF1P22415 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.26■□□□□ 0.51
USF1P22415 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.26■□□□□ 0.51
USF1P22415 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
USF1P22415 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.26■□□□□ 0.51
USF1P22415 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USF1P22415 AC079630.1-202ENST00000618127 1840 ntBASIC18.26■□□□□ 0.51
USF1P22415 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
USF1P22415 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USF1P22415 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.25■□□□□ 0.51
USF1P22415 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.25■□□□□ 0.51
USF1P22415 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USF1P22415 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
USF1P22415 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.25■□□□□ 0.51
USF1P22415 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.25■□□□□ 0.51
USF1P22415 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.25■□□□□ 0.51
USF1P22415 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.25■□□□□ 0.51
USF1P22415 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
USF1P22415 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.25■□□□□ 0.51
USF1P22415 KRT18P61-201ENST00000585825 1298 ntBASIC18.25■□□□□ 0.51
USF1P22415 AP004607.4-201ENST00000530158 1459 ntBASIC18.25■□□□□ 0.51
USF1P22415 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
USF1P22415 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.25■□□□□ 0.51
USF1P22415 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.25■□□□□ 0.51
USF1P22415 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.24■□□□□ 0.51
USF1P22415 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
USF1P22415 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.24■□□□□ 0.51
USF1P22415 ANOS2P-203ENST00000472227 1816 ntBASIC18.24■□□□□ 0.51
USF1P22415 KRT19P1-201ENST00000405746 1186 ntBASIC18.24■□□□□ 0.51
USF1P22415 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.24■□□□□ 0.51
USF1P22415 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USF1P22415 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
USF1P22415 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.24■□□□□ 0.51
USF1P22415 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USF1P22415 AC004854.2-201ENST00000608450 1441 ntBASIC18.23■□□□□ 0.51
USF1P22415 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.23■□□□□ 0.51
USF1P22415 AC092068.2-201ENST00000590491 1708 ntBASIC18.23■□□□□ 0.51
USF1P22415 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.23■□□□□ 0.51
USF1P22415 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
USF1P22415 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.23■□□□□ 0.51
USF1P22415 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
USF1P22415 BID-214ENST00000617586 542 ntTSL 5 BASIC18.23■□□□□ 0.51
USF1P22415 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
USF1P22415 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USF1P22415 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.22■□□□□ 0.51
USF1P22415 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
USF1P22415 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
USF1P22415 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
USF1P22415 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms