Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.93■□□□□ 0.46
ATF4P18848 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATF4P18848 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATF4P18848 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATF4P18848 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATF4P18848 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ATF4P18848 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.92■□□□□ 0.46
ATF4P18848 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.92■□□□□ 0.46
ATF4P18848 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 C11orf96-202ENST00000528572 1834 ntBASIC17.92■□□□□ 0.46
ATF4P18848 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
ATF4P18848 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ATF4P18848 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.91■□□□□ 0.46
ATF4P18848 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
ATF4P18848 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.91■□□□□ 0.46
ATF4P18848 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
ATF4P18848 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
ATF4P18848 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC17.91■□□□□ 0.46
ATF4P18848 MIR6089-201ENST00000616698 64 ntBASIC17.91■□□□□ 0.46
ATF4P18848 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
ATF4P18848 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.91■□□□□ 0.46
ATF4P18848 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
ATF4P18848 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ATF4P18848 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.9■□□□□ 0.46
ATF4P18848 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ATF4P18848 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.9■□□□□ 0.46
ATF4P18848 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 GFER-205ENST00000569451 517 ntTSL 5 BASIC17.9■□□□□ 0.46
ATF4P18848 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
ATF4P18848 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.9■□□□□ 0.46
ATF4P18848 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.9■□□□□ 0.46
ATF4P18848 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ATF4P18848 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
ATF4P18848 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
ATF4P18848 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
ATF4P18848 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
ATF4P18848 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.89■□□□□ 0.45
ATF4P18848 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
ATF4P18848 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.89■□□□□ 0.45
ATF4P18848 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC17.89■□□□□ 0.45
ATF4P18848 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.89■□□□□ 0.45
ATF4P18848 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ATF4P18848 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.89■□□□□ 0.45
ATF4P18848 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
ATF4P18848 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ATF4P18848 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ATF4P18848 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.88■□□□□ 0.45
ATF4P18848 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ATF4P18848 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ATF4P18848 TSPY13P-201ENST00000338964 914 ntBASIC17.88■□□□□ 0.45
ATF4P18848 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC17.88■□□□□ 0.45
ATF4P18848 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ATF4P18848 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
ATF4P18848 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.88■□□□□ 0.45
ATF4P18848 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
ATF4P18848 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
ATF4P18848 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms