Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CDC42SE1Q9NRR8 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC14.31□□□□□ -0.12
CDC42SE1Q9NRR8 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDC42SE1Q9NRR8 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC14.3□□□□□ -0.12
CDC42SE1Q9NRR8 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDC42SE1Q9NRR8 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CDC42SE1Q9NRR8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDC42SE1Q9NRR8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC14.27□□□□□ -0.12
CDC42SE1Q9NRR8 PKM-203ENST00000389093 2279 ntTSL 5 BASIC14.27□□□□□ -0.12
CDC42SE1Q9NRR8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC14.27□□□□□ -0.12
CDC42SE1Q9NRR8 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDC42SE1Q9NRR8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDC42SE1Q9NRR8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC14.27□□□□□ -0.13
CDC42SE1Q9NRR8 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 LTK-203ENST00000453182 2412 ntTSL 2 BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CDC42SE1Q9NRR8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDC42SE1Q9NRR8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC14.24□□□□□ -0.13
CDC42SE1Q9NRR8 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDC42SE1Q9NRR8 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDC42SE1Q9NRR8 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDC42SE1Q9NRR8 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDC42SE1Q9NRR8 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDC42SE1Q9NRR8 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CDC42SE1Q9NRR8 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDC42SE1Q9NRR8 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDC42SE1Q9NRR8 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CDC42SE1Q9NRR8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDC42SE1Q9NRR8 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CDC42SE1Q9NRR8 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDC42SE1Q9NRR8 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDC42SE1Q9NRR8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDC42SE1Q9NRR8 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC14.16□□□□□ -0.14
CDC42SE1Q9NRR8 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDC42SE1Q9NRR8 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDC42SE1Q9NRR8 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDC42SE1Q9NRR8 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDC42SE1Q9NRR8 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDC42SE1Q9NRR8 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDC42SE1Q9NRR8 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDC42SE1Q9NRR8 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDC42SE1Q9NRR8 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
CDC42SE1Q9NRR8 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CDC42SE1Q9NRR8 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CDC42SE1Q9NRR8 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
CDC42SE1Q9NRR8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CDC42SE1Q9NRR8 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDC42SE1Q9NRR8 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDC42SE1Q9NRR8 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDC42SE1Q9NRR8 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CDC42SE1Q9NRR8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC14.05□□□□□ -0.16
CDC42SE1Q9NRR8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms