Protein–RNA interactions for Protein: Q8NEM2

SHCBP1, SHC SH2 domain-binding protein 1, humanhuman

Predictions only

Length 672 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1Q8NEM2 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.41■■■□□ 2.62
SHCBP1Q8NEM2 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
SHCBP1Q8NEM2 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.4■■■□□ 2.62
SHCBP1Q8NEM2 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SHCBP1Q8NEM2 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SHCBP1Q8NEM2 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.39■■■□□ 2.62
SHCBP1Q8NEM2 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.39■■■□□ 2.62
SHCBP1Q8NEM2 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.39■■■□□ 2.62
SHCBP1Q8NEM2 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
SHCBP1Q8NEM2 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
SHCBP1Q8NEM2 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SHCBP1Q8NEM2 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHCBP1Q8NEM2 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SHCBP1Q8NEM2 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.37■■■□□ 2.61
SHCBP1Q8NEM2 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHCBP1Q8NEM2 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SHCBP1Q8NEM2 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SHCBP1Q8NEM2 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHCBP1Q8NEM2 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.33■■■□□ 2.61
SHCBP1Q8NEM2 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SHCBP1Q8NEM2 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.31■■■□□ 2.6
SHCBP1Q8NEM2 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.31■■■□□ 2.6
SHCBP1Q8NEM2 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.31■■■□□ 2.6
SHCBP1Q8NEM2 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.3■■■□□ 2.6
SHCBP1Q8NEM2 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHCBP1Q8NEM2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHCBP1Q8NEM2 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.29■■■□□ 2.6
SHCBP1Q8NEM2 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHCBP1Q8NEM2 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SHCBP1Q8NEM2 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.27■■■□□ 2.6
SHCBP1Q8NEM2 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHCBP1Q8NEM2 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SHCBP1Q8NEM2 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHCBP1Q8NEM2 ZNRF2P2-203ENST00000454624 420 ntBASIC31.24■■■□□ 2.59
SHCBP1Q8NEM2 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.24■■■□□ 2.59
SHCBP1Q8NEM2 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SHCBP1Q8NEM2 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SHCBP1Q8NEM2 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.22■■■□□ 2.59
SHCBP1Q8NEM2 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHCBP1Q8NEM2 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHCBP1Q8NEM2 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHCBP1Q8NEM2 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.2■■■□□ 2.59
SHCBP1Q8NEM2 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SHCBP1Q8NEM2 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
SHCBP1Q8NEM2 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHCBP1Q8NEM2 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.19■■■□□ 2.58
SHCBP1Q8NEM2 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.19■■■□□ 2.58
SHCBP1Q8NEM2 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHCBP1Q8NEM2 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHCBP1Q8NEM2 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHCBP1Q8NEM2 HLA-V-202ENST00000446817 847 ntBASIC31.17■■■□□ 2.58
SHCBP1Q8NEM2 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.17■■■□□ 2.58
SHCBP1Q8NEM2 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHCBP1Q8NEM2 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
SHCBP1Q8NEM2 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.16■■■□□ 2.58
SHCBP1Q8NEM2 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.14■■■□□ 2.58
SHCBP1Q8NEM2 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SHCBP1Q8NEM2 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.13■■■□□ 2.57
SHCBP1Q8NEM2 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SHCBP1Q8NEM2 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.12■■■□□ 2.57
SHCBP1Q8NEM2 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SHCBP1Q8NEM2 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.11■■■□□ 2.57
SHCBP1Q8NEM2 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SHCBP1Q8NEM2 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHCBP1Q8NEM2 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHCBP1Q8NEM2 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
SHCBP1Q8NEM2 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.09■■■□□ 2.57
SHCBP1Q8NEM2 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SHCBP1Q8NEM2 DUX4L29-201ENST00000425409 679 ntBASIC31.08■■■□□ 2.57
SHCBP1Q8NEM2 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SHCBP1Q8NEM2 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SHCBP1Q8NEM2 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.03■■■□□ 2.56
SHCBP1Q8NEM2 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.03■■■□□ 2.56
SHCBP1Q8NEM2 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.02■■■□□ 2.56
SHCBP1Q8NEM2 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31■■■□□ 2.55
SHCBP1Q8NEM2 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
SHCBP1Q8NEM2 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHCBP1Q8NEM2 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.99■■■□□ 2.55
SHCBP1Q8NEM2 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.98■■■□□ 2.55
SHCBP1Q8NEM2 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
SHCBP1Q8NEM2 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHCBP1Q8NEM2 AC021231.2-201ENST00000594613 730 ntBASIC30.97■■■□□ 2.55
SHCBP1Q8NEM2 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
SHCBP1Q8NEM2 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHCBP1Q8NEM2 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
SHCBP1Q8NEM2 AC108673.1-201ENST00000510422 1159 ntBASIC30.94■■■□□ 2.54
SHCBP1Q8NEM2 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHCBP1Q8NEM2 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SHCBP1Q8NEM2 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.93■■■□□ 2.54
SHCBP1Q8NEM2 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
SHCBP1Q8NEM2 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SHCBP1Q8NEM2 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.93■■■□□ 2.54
SHCBP1Q8NEM2 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.93■■■□□ 2.54
SHCBP1Q8NEM2 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
SHCBP1Q8NEM2 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHCBP1Q8NEM2 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHCBP1Q8NEM2 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHCBP1Q8NEM2 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.89■■■□□ 2.54
SHCBP1Q8NEM2 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
SHCBP1Q8NEM2 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.89■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms