Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SMC1BQ8NDV3 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC33.48■■■□□ 2.95
SMC1BQ8NDV3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
SMC1BQ8NDV3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC33.47■■■□□ 2.95
SMC1BQ8NDV3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC33.46■■■□□ 2.95
SMC1BQ8NDV3 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
SMC1BQ8NDV3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SMC1BQ8NDV3 ILK-212ENST00000532063 1617 ntTSL 2 BASIC33.42■■■□□ 2.94
SMC1BQ8NDV3 AC016575.1-201ENST00000607026 382 ntBASIC33.42■■■□□ 2.94
SMC1BQ8NDV3 MIR3648-2-201ENST00000581792 180 ntBASIC33.41■■■□□ 2.94
SMC1BQ8NDV3 MIR3648-1-201ENST00000615959 180 ntBASIC33.41■■■□□ 2.94
SMC1BQ8NDV3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
SMC1BQ8NDV3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
SMC1BQ8NDV3 ABHD17AP3-201ENST00000503096 1137 ntBASIC33.38■■■□□ 2.93
SMC1BQ8NDV3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC33.37■■■□□ 2.93
SMC1BQ8NDV3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC33.37■■■□□ 2.93
SMC1BQ8NDV3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SMC1BQ8NDV3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC33.34■■■□□ 2.93
SMC1BQ8NDV3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
SMC1BQ8NDV3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC33.33■■■□□ 2.93
SMC1BQ8NDV3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.33■■■□□ 2.93
SMC1BQ8NDV3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC33.33■■■□□ 2.93
SMC1BQ8NDV3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC33.31■■■□□ 2.92
SMC1BQ8NDV3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC33.3■■■□□ 2.92
SMC1BQ8NDV3 AC021231.2-201ENST00000594613 730 ntBASIC33.3■■■□□ 2.92
SMC1BQ8NDV3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
SMC1BQ8NDV3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
SMC1BQ8NDV3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC33.25■■■□□ 2.91
SMC1BQ8NDV3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC33.24■■■□□ 2.91
SMC1BQ8NDV3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC33.24■■■□□ 2.91
SMC1BQ8NDV3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC33.23■■■□□ 2.91
SMC1BQ8NDV3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
SMC1BQ8NDV3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC33.22■■■□□ 2.91
SMC1BQ8NDV3 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC33.2■■■□□ 2.91
SMC1BQ8NDV3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
SMC1BQ8NDV3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
SMC1BQ8NDV3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC33.18■■■□□ 2.9
SMC1BQ8NDV3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC33.18■■■□□ 2.9
SMC1BQ8NDV3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC33.18■■■□□ 2.9
SMC1BQ8NDV3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC33.17■■■□□ 2.9
SMC1BQ8NDV3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC33.16■■■□□ 2.9
SMC1BQ8NDV3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC33.15■■■□□ 2.9
SMC1BQ8NDV3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
SMC1BQ8NDV3 CR559946.2-201ENST00000623684 991 ntBASIC33.13■■■□□ 2.89
SMC1BQ8NDV3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SMC1BQ8NDV3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC33.11■■■□□ 2.89
SMC1BQ8NDV3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
SMC1BQ8NDV3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC33.1■■■□□ 2.89
SMC1BQ8NDV3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
SMC1BQ8NDV3 DUX4L11-201ENST00000611504 1267 ntBASIC33.07■■■□□ 2.88
SMC1BQ8NDV3 DUX4L12-201ENST00000614593 1267 ntBASIC33.07■■■□□ 2.88
SMC1BQ8NDV3 DUX4L14-201ENST00000621227 1267 ntBASIC33.07■■■□□ 2.88
SMC1BQ8NDV3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
SMC1BQ8NDV3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
SMC1BQ8NDV3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC33.06■■■□□ 2.88
SMC1BQ8NDV3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC33.04■■■□□ 2.88
SMC1BQ8NDV3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC33.04■■■□□ 2.88
SMC1BQ8NDV3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC33.04■■■□□ 2.88
SMC1BQ8NDV3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
SMC1BQ8NDV3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC33.03■■■□□ 2.88
SMC1BQ8NDV3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
SMC1BQ8NDV3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
SMC1BQ8NDV3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
SMC1BQ8NDV3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
SMC1BQ8NDV3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC33.01■■■□□ 2.87
SMC1BQ8NDV3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
SMC1BQ8NDV3 LINC01971-201ENST00000617888 1048 ntBASIC32.99■■■□□ 2.87
SMC1BQ8NDV3 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.97■■■□□ 2.87
SMC1BQ8NDV3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.96■■■□□ 2.87
SMC1BQ8NDV3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC32.96■■■□□ 2.87
SMC1BQ8NDV3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.96■■■□□ 2.87
SMC1BQ8NDV3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
SMC1BQ8NDV3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
SMC1BQ8NDV3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC32.94■■■□□ 2.86
SMC1BQ8NDV3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
SMC1BQ8NDV3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SMC1BQ8NDV3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SMC1BQ8NDV3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
SMC1BQ8NDV3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.9■■■□□ 2.86
SMC1BQ8NDV3 ABHD17AP5-201ENST00000580133 923 ntBASIC32.9■■■□□ 2.86
SMC1BQ8NDV3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC32.89■■■□□ 2.86
SMC1BQ8NDV3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.89■■■□□ 2.86
SMC1BQ8NDV3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC32.88■■■□□ 2.85
SMC1BQ8NDV3 WASH5P-204ENST00000632292 975 ntBASIC32.88■■■□□ 2.85
SMC1BQ8NDV3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC32.87■■■□□ 2.85
SMC1BQ8NDV3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC32.87■■■□□ 2.85
SMC1BQ8NDV3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC32.87■■■□□ 2.85
SMC1BQ8NDV3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC32.87■■■□□ 2.85
SMC1BQ8NDV3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC32.87■■■□□ 2.85
SMC1BQ8NDV3 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SMC1BQ8NDV3 RARRES2P2-201ENST00000394842 485 ntBASIC32.86■■■□□ 2.85
SMC1BQ8NDV3 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.85■■■□□ 2.85
SMC1BQ8NDV3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
SMC1BQ8NDV3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC32.84■■■□□ 2.85
SMC1BQ8NDV3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.82■■■□□ 2.84
SMC1BQ8NDV3 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
SMC1BQ8NDV3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
SMC1BQ8NDV3 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.8■■■□□ 2.84
SMC1BQ8NDV3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
SMC1BQ8NDV3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms