Protein–RNA interactions for Protein: P22001

KCNA3, Potassium voltage-gated channel subfamily A member 3, humanhuman

Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNA3P22001 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC34.51■■■■□ 3.12
KCNA3P22001 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC34.5■■■■□ 3.11
KCNA3P22001 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.5■■■■□ 3.11
KCNA3P22001 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
KCNA3P22001 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC34.49■■■■□ 3.11
KCNA3P22001 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
KCNA3P22001 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
KCNA3P22001 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
KCNA3P22001 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
KCNA3P22001 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC34.45■■■■□ 3.1
KCNA3P22001 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
KCNA3P22001 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
KCNA3P22001 MIR639-201ENST00000384974 98 ntBASIC34.42■■■■□ 3.1
KCNA3P22001 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
KCNA3P22001 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
KCNA3P22001 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
KCNA3P22001 DUX4L29-201ENST00000425409 679 ntBASIC34.37■■■■□ 3.09
KCNA3P22001 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
KCNA3P22001 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
KCNA3P22001 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
KCNA3P22001 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
KCNA3P22001 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC34.33■■■■□ 3.09
KCNA3P22001 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.32■■■■□ 3.08
KCNA3P22001 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.31■■■■□ 3.08
KCNA3P22001 WASH5P-204ENST00000632292 975 ntBASIC34.31■■■■□ 3.08
KCNA3P22001 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC34.3■■■■□ 3.08
KCNA3P22001 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC34.3■■■■□ 3.08
KCNA3P22001 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.29■■■■□ 3.08
KCNA3P22001 AC021231.2-201ENST00000594613 730 ntBASIC34.27■■■■□ 3.08
KCNA3P22001 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
KCNA3P22001 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC34.25■■■■□ 3.07
KCNA3P22001 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC34.24■■■■□ 3.07
KCNA3P22001 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.23■■■■□ 3.07
KCNA3P22001 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
KCNA3P22001 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.23■■■■□ 3.07
KCNA3P22001 HSD17B1P1-201ENST00000590052 955 ntBASIC34.22■■■■□ 3.07
KCNA3P22001 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
KCNA3P22001 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.21■■■■□ 3.07
KCNA3P22001 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
KCNA3P22001 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC34.19■■■■□ 3.06
KCNA3P22001 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC34.19■■■■□ 3.06
KCNA3P22001 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
KCNA3P22001 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.18■■■■□ 3.06
KCNA3P22001 MIR3648-2-201ENST00000581792 180 ntBASIC34.18■■■■□ 3.06
KCNA3P22001 MIR3648-1-201ENST00000615959 180 ntBASIC34.18■■■■□ 3.06
KCNA3P22001 AC016575.1-201ENST00000607026 382 ntBASIC34.17■■■■□ 3.06
KCNA3P22001 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC34.15■■■■□ 3.06
KCNA3P22001 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
KCNA3P22001 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC34.15■■■■□ 3.06
KCNA3P22001 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
KCNA3P22001 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
KCNA3P22001 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
KCNA3P22001 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.14■■■■□ 3.06
KCNA3P22001 GDI1-215ENST00000630693 786 ntTSL 4 BASIC34.13■■■■□ 3.05
KCNA3P22001 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
KCNA3P22001 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC34.12■■■■□ 3.05
KCNA3P22001 RNF166-209ENST00000567844 633 ntTSL 5 BASIC34.11■■■■□ 3.05
KCNA3P22001 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.1■■■■□ 3.05
KCNA3P22001 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
KCNA3P22001 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
KCNA3P22001 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC34.07■■■■□ 3.04
KCNA3P22001 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC34.07■■■■□ 3.04
KCNA3P22001 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC34.07■■■■□ 3.04
KCNA3P22001 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
KCNA3P22001 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
KCNA3P22001 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
KCNA3P22001 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
KCNA3P22001 CIB2-204ENST00000557846 934 ntTSL 3 BASIC34.01■■■■□ 3.03
KCNA3P22001 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC34■■■■□ 3.03
KCNA3P22001 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC34■■■■□ 3.03
KCNA3P22001 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
KCNA3P22001 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC33.97■■■■□ 3.03
KCNA3P22001 CR559946.2-201ENST00000623684 991 ntBASIC33.97■■■■□ 3.03
KCNA3P22001 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
KCNA3P22001 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC33.96■■■■□ 3.03
KCNA3P22001 MIR6090-201ENST00000622481 60 ntBASIC33.96■■■■□ 3.03
KCNA3P22001 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
KCNA3P22001 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC33.92■■■■□ 3.02
KCNA3P22001 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC33.92■■■■□ 3.02
KCNA3P22001 DUX4L11-201ENST00000611504 1267 ntBASIC33.92■■■■□ 3.02
KCNA3P22001 DUX4L12-201ENST00000614593 1267 ntBASIC33.92■■■■□ 3.02
KCNA3P22001 DUX4L14-201ENST00000621227 1267 ntBASIC33.92■■■■□ 3.02
KCNA3P22001 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
KCNA3P22001 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
KCNA3P22001 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC33.89■■■■□ 3.02
KCNA3P22001 ABHD17AP3-201ENST00000503096 1137 ntBASIC33.89■■■■□ 3.02
KCNA3P22001 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC33.88■■■■□ 3.01
KCNA3P22001 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
KCNA3P22001 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
KCNA3P22001 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC33.86■■■■□ 3.01
KCNA3P22001 AGPS-202ENST00000409888 815 ntTSL 4 BASIC33.86■■■■□ 3.01
KCNA3P22001 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC33.86■■■■□ 3.01
KCNA3P22001 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC33.85■■■■□ 3.01
KCNA3P22001 LINC01971-201ENST00000617888 1048 ntBASIC33.85■■■■□ 3.01
KCNA3P22001 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
KCNA3P22001 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
KCNA3P22001 AC108673.1-201ENST00000510422 1159 ntBASIC33.83■■■■□ 3.01
KCNA3P22001 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
KCNA3P22001 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC33.82■■■■□ 3
KCNA3P22001 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC33.82■■■■□ 3
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms