Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 TPCN1-204ENST00000541517 5173 ntTSL 5 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 CLINT1-201ENST00000411809 3440 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AC026369.1-202ENST00000508953 4913 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 GRIK1-206ENST00000399913 3234 ntTSL 2 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 SLC25A14-213ENST00000543953 1403 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 TSTA3-210ENST00000529064 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 THYN1-202ENST00000352327 835 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 RN7SKP218-201ENST00000410222 292 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 ART2P-201ENST00000415521 822 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 HLA-U-204ENST00000418981 186 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 EEF1GP3-201ENST00000421044 1288 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 LINC00106-201ENST00000430235 370 ntTSL 2 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AC023886.1-202ENST00000504009 477 ntTSL 3 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AP006437.2-201ENST00000528000 345 ntTSL 3 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AP002383.2-201ENST00000545768 675 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AC089987.3-201ENST00000551847 588 ntTSL 4 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AL139317.2-201ENST00000556998 158 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AC005154.1-204ENST00000580902 926 ntTSL 4 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 LINC00662-204ENST00000588027 562 ntTSL 5 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 SARS2-211ENST00000598831 665 ntTSL 5 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AC018755.1-201ENST00000601315 1182 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 MIR6871-201ENST00000613433 56 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AL137028.1-201ENST00000620521 555 ntBASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 GALNT15-203ENST00000437509 2416 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
NPIPA3F8WFD2 AL592528.1-201ENST00000380008 3466 ntTSL 2 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 PATJ-215ENST00000635137 2298 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 MORN4-203ENST00000478953 2225 ntTSL 2 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 VPS52-218ENST00000482399 3338 ntTSL 2 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 ABCF2-201ENST00000222388 2185 ntTSL 5 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 FAM213A-201ENST00000372181 2058 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 SYNPO-202ENST00000394243 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 OPN1MW3-201ENST00000599405 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 SLC1A2-208ENST00000606205 1890 ntTSL 2 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 ZDHHC9-201ENST00000357166 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 AC007614.4-201ENST00000564048 1827 ntBASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 AL512383.1-201ENST00000624175 2677 ntBASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 METAP2-209ENST00000550777 1779 ntTSL 5 BASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 AL590552.1-201ENST00000623164 1770 ntBASIC11.21□□□□□ -0.62
NPIPA3F8WFD2 BHLHB9P1-201ENST00000553845 1651 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 ASAP3-201ENST00000336689 4050 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 DLGAP2-201ENST00000421627 3165 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 FAM198B-202ENST00000393807 4544 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 SPIN1-201ENST00000375859 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 RIMKLA-202ENST00000431473 8909 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 PTPN6-201ENST00000318974 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 MOV10-204ENST00000413052 3641 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AL662907.1-201ENST00000622988 1360 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 HSPBAP1-201ENST00000306103 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 RAPGEF3-204ENST00000405493 5751 ntAPPRIS P3 TSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 RHBDL3-203ENST00000536287 4470 ntTSL 2 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 SPACA7-201ENST00000283550 795 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 ARF1P2-201ENST00000392493 538 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 SYCP3-203ENST00000392927 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 HLA-DQB1-203ENST00000399082 1219 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 RBM14-203ENST00000409372 876 ntTSL 2 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AL139156.2-201ENST00000414059 340 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AL162595.1-201ENST00000429227 868 ntTSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 MED15P7-201ENST00000435410 822 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 LINC00879-202ENST00000463200 1041 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AC002347.2-201ENST00000584139 171 ntTSL 3 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AC092329.1-201ENST00000594653 574 ntTSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 Metazoa_SRP.198-201ENST00000610617 323 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AC012313.9-201ENST00000619318 633 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 BIN3-212ENST00000640731 450 ntTSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 TRAPPC2L-211ENST00000565504 3102 ntTSL 2 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 PITX2-212ENST00000614423 1866 ntAPPRIS ALT1 TSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 MYO10-210ENST00000513610 8038 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 POPDC2-208ENST00000493094 1837 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 MAGEA9B-203ENST00000595065 1807 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 AL354861.3-201ENST00000600140 2412 ntBASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 TEX13D-201ENST00000632372 4203 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 GTF2IP20-203ENST00000634905 2966 ntTSL 5 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 POTEB-202ENST00000439682 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 PTPRD-AS2-201ENST00000429581 2838 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 PDHA1-213ENST00000545074 3391 ntAPPRIS ALT1 TSL 2 BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 DESI1-201ENST00000263256 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
NPIPA3F8WFD2 TNFSF10-202ENST00000420541 1619 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms