Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 YME1L1-208ENST00000491542 912 ntTSL 216.01■□□□□ 0.152e-6■■■■■ 41.3
SF3B1O75533 YME1L1-207ENST00000477432 3474 ntTSL 1 (best) BASIC11.41□□□□□ -0.582e-6■■■■■ 41.3
SF3B1O75533 PTBP1-210ENST00000586944 4661 ntTSL 217.5■□□□□ 0.392e-6■■■■■ 41.3
SF3B1O75533 PTBP1-213ENST00000587191 357 ntTSL 512.6□□□□□ -0.392e-6■■■■■ 41.3
SF3B1O75533 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.823e-6■■■■■ 41.3
SF3B1O75533 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.37■□□□□ 0.693e-6■■■■■ 41.3
SF3B1O75533 EMD-207ENST00000486738 1284 ntTSL 319.04■□□□□ 0.643e-6■■■■■ 41.3
SF3B1O75533 EMD-206ENST00000485261 792 ntTSL 319.01■□□□□ 0.633e-6■■■■■ 41.3
SF3B1O75533 EMD-203ENST00000428228 946 ntTSL 318.88■□□□□ 0.613e-6■■■■■ 41.3
SF3B1O75533 EMD-208ENST00000492448 832 ntTSL 218.31■□□□□ 0.523e-6■■■■■ 41.3
SF3B1O75533 TOP1-201ENST00000361337 3738 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.922e-6■■■■■ 41.3
SF3B1O75533 ANKRD10-210ENST00000494859 705 ntTSL 532.45■■■□□ 2.781e-6■■■■■ 41.2
SF3B1O75533 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.96■■□□□ 1.111e-6■■■■■ 41.2
SF3B1O75533 ANKRD10-206ENST00000465753 997 ntTSL 1 (best)20.85■□□□□ 0.931e-6■■■■■ 41.2
SF3B1O75533 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.611e-6■■■■■ 41.2
SF3B1O75533 DCAF8-215ENST00000490368 876 ntTSL 314.08□□□□□ -0.166e-6■■■■■ 41.2
SF3B1O75533 DCAF8-213ENST00000477163 513 ntTSL 311.35□□□□□ -0.596e-6■■■■■ 41.2
SF3B1O75533 DHX9-206ENST00000483416 814 ntTSL 518.26■□□□□ 0.512e-6■■■■■ 41.2
SF3B1O75533 PRPF8-216ENST00000577001 3274 ntTSL 514.98□□□□□ -0.012e-6■■■■■ 41.2
SF3B1O75533 CALM3-205ENST00000486500 2536 ntTSL 213□□□□□ -0.334e-6■■■■■ 41.2
SF3B1O75533 MICALL2-211ENST00000487156 874 ntTSL 521.2■□□□□ 0.983e-6■■■■■ 41.2
SF3B1O75533 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC14.17□□□□□ -0.146e-7■■■■■ 41.1
SF3B1O75533 ELP2-202ENST00000351393 2453 ntTSL 2 BASIC12.29□□□□□ -0.446e-7■■■■■ 41.1
SF3B1O75533 ELP2-204ENST00000423854 2385 ntTSL 1 (best) BASIC12.11□□□□□ -0.476e-7■■■■■ 41.1
SF3B1O75533 ELP2-201ENST00000350494 2487 ntTSL 2 BASIC11.98□□□□□ -0.496e-7■■■■■ 41.1
SF3B1O75533 ELP2-210ENST00000539560 2542 ntTSL 1 (best)10.78□□□□□ -0.686e-7■■■■■ 41.1
SF3B1O75533 ELP2-205ENST00000442325 2722 ntTSL 2 BASIC9.65□□□□□ -0.866e-7■■■■■ 41.1
SF3B1O75533 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.19■□□□□ 0.663e-6■■■■■ 41.1
SF3B1O75533 TXNRD2-207ENST00000462843 810 ntTSL 318.47■□□□□ 0.553e-6■■■■■ 41.1
SF3B1O75533 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC15.25■□□□□ 0.033e-6■■■■■ 41.1
SF3B1O75533 TXNRD2-216ENST00000495655 2700 ntTSL 214.19□□□□□ -0.143e-6■■■■■ 41.1
SF3B1O75533 MED15-226ENST00000478831 707 ntTSL 412.57□□□□□ -0.42e-6■■■■■ 41.1
SF3B1O75533 PPT2-EGFL8-203ENST00000428388 2878 ntAPPRIS P5 TSL 216.62■□□□□ 0.252e-6■■■■■ 41.1
SF3B1O75533 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.242e-6■■■■■ 41.1
SF3B1O75533 TLE2-222ENST00000592584 600 ntTSL 319.86■□□□□ 0.774e-7■■■■■ 41
SF3B1O75533 TLE2-207ENST00000587137 559 ntTSL 518.23■□□□□ 0.514e-7■■■■■ 41
SF3B1O75533 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.07■□□□□ 0.484e-7■■■■■ 41
SF3B1O75533 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.464e-7■■■■■ 41
SF3B1O75533 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.364e-7■■■■■ 41
SF3B1O75533 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.32■□□□□ 0.364e-7■■■■■ 41
SF3B1O75533 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.99■□□□□ 0.314e-7■■■■■ 41
SF3B1O75533 TLE2-218ENST00000591457 393 ntTSL 516.99■□□□□ 0.314e-7■■■■■ 41
SF3B1O75533 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.64■□□□□ 0.254e-7■■■■■ 41
SF3B1O75533 TLE2-221ENST00000592305 698 ntTSL 1 (best)14.24□□□□□ -0.134e-7■■■■■ 41
SF3B1O75533 TLE2-220ENST00000591720 589 ntTSL 413.58□□□□□ -0.244e-7■■■■■ 41
SF3B1O75533 ABO-201ENST00000453660 6341 ntTSL 1 (best)13.22□□□□□ -0.292e-6■■■■■ 41
SF3B1O75533 MAN2C1-230ENST00000566099 1316 ntTSL 524.11■■□□□ 1.452e-6■■■■■ 41
SF3B1O75533 MAN2C1-235ENST00000567163 1356 ntTSL 523.9■■□□□ 1.422e-6■■■■■ 41
SF3B1O75533 MAN2C1-219ENST00000564570 803 ntTSL 523.5■■□□□ 1.352e-6■■■■■ 41
SF3B1O75533 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.4■■□□□ 1.182e-6■■■■■ 41
SF3B1O75533 MAN2C1-236ENST00000567360 457 ntTSL 221.41■■□□□ 1.022e-6■■■■■ 41
SF3B1O75533 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.233e-6■■■■■ 41
SF3B1O75533 ACADVL-225ENST00000581378 752 ntTSL 317.31■□□□□ 0.362e-6■■■■■ 40.9
SF3B1O75533 MICALL2-202ENST00000413446 3046 ntTSL 213.92□□□□□ -0.182e-6■■■■■ 40.9
SF3B1O75533 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.417e-9■■■■■ 40.9
SF3B1O75533 SP3-202ENST00000416195 3627 ntAPPRIS ALT2 TSL 1 (best)11.71□□□□□ -0.537e-9■■■■■ 40.9
SF3B1O75533 YY1AP1-224ENST00000493625 958 ntTSL 55.06□□□□□ -1.64e-6■■■■■ 40.9
SF3B1O75533 YY1AP1-222ENST00000477470 680 ntTSL 34.95□□□□□ -1.624e-6■■■■■ 40.9
SF3B1O75533 YY1AP1-223ENST00000488784 863 ntTSL 54.87□□□□□ -1.634e-6■■■■■ 40.9
SF3B1O75533 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.683e-7■■■■■ 40.8
SF3B1O75533 PDLIM7-208ENST00000493815 1686 ntTSL 1 (best)19.29■□□□□ 0.683e-7■■■■■ 40.8
SF3B1O75533 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.633e-7■■■■■ 40.8
SF3B1O75533 PDLIM7-207ENST00000486828 1904 ntTSL 1 (best)18.55■□□□□ 0.563e-7■■■■■ 40.8
SF3B1O75533 URI1-206ENST00000574110 2495 ntTSL 1 (best)24.95■■□□□ 1.581e-6■■■■■ 40.8
SF3B1O75533 CMTR1-202ENST00000455891 1280 ntTSL 222.69■■□□□ 1.223e-6■■■■■ 40.8
SF3B1O75533 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.621e-6■■■■■ 40.8
SF3B1O75533 KDM3A-204ENST00000427678 565 ntTSL 216.19■□□□□ 0.183e-6■■■■■ 40.8
SF3B1O75533 KDM3A-215ENST00000498528 352 ntTSL 36.71□□□□□ -1.343e-6■■■■■ 40.8
SF3B1O75533 KDM3A-209ENST00000466058 448 ntTSL 46.13□□□□□ -1.433e-6■■■■■ 40.8
SF3B1O75533 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.431e-6■■■■■ 40.8
SF3B1O75533 CMTR1-206ENST00000493656 550 ntTSL 56.02□□□□□ -1.453e-6■■■■■ 40.8
SF3B1O75533 DDX39A-213ENST00000590315 566 ntTSL 513.89□□□□□ -0.192e-6■■■■■ 40.8
SF3B1O75533 DDX39A-210ENST00000589675 829 ntTSL 312.29□□□□□ -0.442e-6■■■■■ 40.8
SF3B1O75533 DDHD2-209ENST00000526237 697 ntTSL 520.15■□□□□ 0.826e-7■■■■■ 40.8
SF3B1O75533 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.186e-7■■■■■ 40.8
SF3B1O75533 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.056e-7■■■■■ 40.8
SF3B1O75533 DDHD2-211ENST00000527415 1124 ntTSL 58.99□□□□□ -0.976e-7■■■■■ 40.8
SF3B1O75533 DDHD2-223ENST00000532222 696 ntTSL 58.47□□□□□ -1.056e-7■■■■■ 40.8
SF3B1O75533 PTK2-225ENST00000520892 571 ntTSL 4 BASIC14.9□□□□□ -0.023e-7■■■■■ 40.8
SF3B1O75533 PTK2-234ENST00000521791 556 ntTSL 49.15□□□□□ -0.943e-7■■■■■ 40.8
SF3B1O75533 VCL-205ENST00000478896 727 ntTSL 514.66□□□□□ -0.061e-6■■■■■ 40.8
SF3B1O75533 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.521e-6■■■■■ 40.8
SF3B1O75533 VCL-201ENST00000211998 5490 ntAPPRIS P4 TSL 1 (best) BASIC10.56□□□□□ -0.721e-6■■■■■ 40.8
SF3B1O75533 VCL-206ENST00000623461 7995 ntTSL 1 (best)9.07□□□□□ -0.961e-6■■■■■ 40.8
SF3B1O75533 VCL-207ENST00000624354 3307 ntTSL 28.9□□□□□ -0.991e-6■■■■■ 40.8
SF3B1O75533 RNU6-9-201ENST00000384776 107 ntBASIC1.85□□□□□ -2.118e-34■■■■■ 40.8
SF3B1O75533 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC14.2□□□□□ -0.141e-7■■■■■ 40.7
SF3B1O75533 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.483e-6■■■■■ 40.7
SF3B1O75533 PFKL-207ENST00000474114 6007 ntTSL 1 (best)18.82■□□□□ 0.62e-6■■■■■ 40.6
SF3B1O75533 MFN1-204ENST00000467174 543 ntTSL 423.31■■□□□ 1.321e-8■■■■■ 40.6
SF3B1O75533 ACSS2-205ENST00000467019 504 ntTSL 423.65■■□□□ 1.383e-6■■■■■ 40.6
SF3B1O75533 ACSS2-222ENST00000493805 603 ntTSL 421.75■■□□□ 1.073e-6■■■■■ 40.6
SF3B1O75533 ACSS2-208ENST00000473172 665 ntTSL 321.5■■□□□ 1.033e-6■■■■■ 40.6
SF3B1O75533 ACSS2-215ENST00000481971 570 ntTSL 415.2■□□□□ 0.023e-6■■■■■ 40.6
SF3B1O75533 ACSS2-212ENST00000480274 567 ntTSL 514.64□□□□□ -0.073e-6■■■■■ 40.6
SF3B1O75533 ACSS2-209ENST00000475459 558 ntTSL 414.15□□□□□ -0.143e-6■■■■■ 40.6
SF3B1O75533 ACSS2-217ENST00000488172 648 ntTSL 411.2□□□□□ -0.623e-6■■■■■ 40.6
SF3B1O75533 ACSS2-204ENST00000464399 358 ntTSL 57.17□□□□□ -1.263e-6■■■■■ 40.6
SF3B1O75533 CEPT1-202ENST00000460443 851 ntTSL 522.9■■□□□ 1.262e-6■■■■■ 40.6
SF3B1O75533 SH2B1-215ENST00000569651 821 ntTSL 521.31■■□□□ 14e-7■■■■■ 40.6
Retrieved 100 of 46,956 protein–RNA pairs in 2969.8 ms