Protein–RNA interactions for Protein: Q9BXL8

CDCA4, Cell division cycle-associated protein 4, humanhuman

Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA4Q9BXL8 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 THA1P-201ENST00000590384 1145 ntBASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDCA4Q9BXL8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 KRT18P24-201ENST00000344739 1156 ntBASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDCA4Q9BXL8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 DUX4L4-201ENST00000566884 1269 ntBASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CDCA4Q9BXL8 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 DUX4L18-201ENST00000553347 1267 ntBASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDCA4Q9BXL8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CDCA4Q9BXL8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CDCA4Q9BXL8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CDCA4Q9BXL8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CDCA4Q9BXL8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CDCA4Q9BXL8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CDCA4Q9BXL8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CDCA4Q9BXL8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.37■□□□□ 0.69
CDCA4Q9BXL8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms