Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ERCC2-211ENST00000588652 2405 ntTSL 219■□□□□ 0.631e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-213ENST00000487165 2020 ntTSL 1 (best)18.96■□□□□ 0.632e-6■■■□□ 17.2
DDX55Q8NHQ9 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.571e-6■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-216ENST00000641834 1718 nt18.57■□□□□ 0.565e-8■■■□□ 17.2
DDX55Q8NHQ9 AHSA1-204ENST00000554156 588 ntTSL 218.44■□□□□ 0.541e-6■■■□□ 17.2
DDX55Q8NHQ9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.531e-6■■■□□ 17.2
DDX55Q8NHQ9 CSNK1G2-207ENST00000590106 1006 ntTSL 518.24■□□□□ 0.511e-6■■■□□ 17.2
DDX55Q8NHQ9 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.08■□□□□ 0.491e-6■■■□□ 17.2
DDX55Q8NHQ9 NBEAL2-201ENST00000416683 6364 ntTSL 1 (best)18.06■□□□□ 0.481e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.03■□□□□ 0.481e-6■■■□□ 17.2
DDX55Q8NHQ9 UROS-209ENST00000470483 777 ntTSL 217.78■□□□□ 0.441e-6■■■□□ 17.2
DDX55Q8NHQ9 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.421e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-215ENST00000494454 2004 ntTSL 1 (best)17.57■□□□□ 0.42e-6■■■□□ 17.2
DDX55Q8NHQ9 SUMF2-212ENST00000447501 1249 ntTSL 217.45■□□□□ 0.381e-6■■■□□ 17.2
DDX55Q8NHQ9 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.381e-6■■■□□ 17.2
DDX55Q8NHQ9 UROS-210ENST00000484541 857 ntTSL 317.39■□□□□ 0.371e-6■■■□□ 17.2
DDX55Q8NHQ9 RGS14-207ENST00000506944 590 ntTSL 217.36■□□□□ 0.371e-6■■■□□ 17.2
DDX55Q8NHQ9 PTDSS2-211ENST00000531411 624 ntTSL 217.24■□□□□ 0.351e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC17.04■□□□□ 0.322e-6■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.325e-8■■■□□ 17.2
DDX55Q8NHQ9 STK16-203ENST00000409516 895 ntTSL 2 BASIC16.96■□□□□ 0.311e-6■■■□□ 17.2
DDX55Q8NHQ9 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.88■□□□□ 0.291e-6■■■□□ 17.2
DDX55Q8NHQ9 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.285e-7■■■□□ 17.2
DDX55Q8NHQ9 PRKACA-204ENST00000587372 824 ntTSL 316.72■□□□□ 0.271e-18■■■□□ 17.2
DDX55Q8NHQ9 UROS-207ENST00000464267 1038 ntTSL 316.67■□□□□ 0.261e-6■■■□□ 17.2
DDX55Q8NHQ9 UROS-208ENST00000465577 721 ntTSL 516.67■□□□□ 0.261e-6■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-203ENST00000593287 578 ntTSL 516.3■□□□□ 0.21e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC15.89■□□□□ 0.131e-6■■■□□ 17.2
DDX55Q8NHQ9 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.111e-6■■■□□ 17.2
DDX55Q8NHQ9 TICRR-203ENST00000561095 2367 ntTSL 1 (best)15.47■□□□□ 0.071e-6■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-209ENST00000597705 892 ntTSL 315.43■□□□□ 0.062e-13■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-210ENST00000598463 1844 ntTSL 1 (best)15.36■□□□□ 0.055e-8■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-215ENST00000641539 717 nt15.19■□□□□ 0.022e-13■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-208ENST00000597493 971 ntTSL 215.16■□□□□ 0.022e-13■■■□□ 17.2
DDX55Q8NHQ9 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.011e-6■■■□□ 17.2
DDX55Q8NHQ9 TXNRD2-216ENST00000495655 2700 ntTSL 215.06■□□□□ 02e-6■■■□□ 17.2
DDX55Q8NHQ9 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.011e-6■■■□□ 17.2
DDX55Q8NHQ9 C19orf48-205ENST00000596287 827 ntTSL 214.37□□□□□ -0.112e-13■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-208ENST00000504489 538 ntTSL 4 BASIC14.24□□□□□ -0.131e-6■■■□□ 17.2
DDX55Q8NHQ9 NBEAL2-204ENST00000443829 3508 ntTSL 1 (best)14.22□□□□□ -0.131e-6■■■□□ 17.2
DDX55Q8NHQ9 POLE4-201ENST00000233699 602 ntTSL 314.15□□□□□ -0.141e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-220ENST00000514830 802 ntTSL 214.15□□□□□ -0.141e-6■■■□□ 17.2
DDX55Q8NHQ9 ERAL1-203ENST00000461894 1628 ntTSL 1 (best)14.09□□□□□ -0.151e-6■■■□□ 17.2
DDX55Q8NHQ9 CIC-202ENST00000571033 458 ntTSL 213.76□□□□□ -0.211e-6■■■□□ 17.2
DDX55Q8NHQ9 ERAL1-208ENST00000583487 695 ntTSL 313.48□□□□□ -0.251e-6■■■□□ 17.2
DDX55Q8NHQ9 STK16-205ENST00000409743 1069 ntTSL 5 BASIC13.17□□□□□ -0.31e-6■■■□□ 17.2
DDX55Q8NHQ9 BAG5-203ENST00000445922 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-217ENST00000512274 372 ntTSL 2 BASIC12.99□□□□□ -0.331e-6■■■□□ 17.2
DDX55Q8NHQ9 PTDSS2-205ENST00000526878 3134 ntTSL 212.14□□□□□ -0.471e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-206ENST00000437932 5713 ntTSL 5 BASIC12.1□□□□□ -0.471e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-223ENST00000627587 1853 ntTSL 211.11□□□□□ -0.631e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-207ENST00000503974 2081 ntTSL 2 BASIC10.67□□□□□ -0.71e-6■■■□□ 17.2
DDX55Q8NHQ9 ERAL1-204ENST00000471992 1508 ntTSL 510.22□□□□□ -0.771e-6■■■□□ 17.2
DDX55Q8NHQ9 KDM4C-202ENST00000381309 4655 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.887e-8■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-201ENST00000317968 6083 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.911e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-222ENST00000615540 6219 ntTSL 1 (best) BASIC9.26□□□□□ -0.931e-6■■■□□ 17.2
DDX55Q8NHQ9 AHSA1-212ENST00000556963 787 ntTSL 29.09□□□□□ -0.951e-6■■■□□ 17.2
DDX55Q8NHQ9 PDLIM5-221ENST00000542407 2979 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.041e-6■■■□□ 17.2
DDX55Q8NHQ9 UROS-212ENST00000622016 563 ntTSL 57.86□□□□□ -1.151e-6■■■□□ 17.2
DDX55Q8NHQ9 TSG101-211ENST00000580814 441 ntTSL 27.23□□□□□ -1.251e-6■■■□□ 17.2
DDX55Q8NHQ9 TSG101-212ENST00000584526 912 ntTSL 57.15□□□□□ -1.261e-6■■■□□ 17.2
DDX55Q8NHQ9 UROS-211ENST00000616800 441 ntTSL 53.19□□□□□ -1.91e-6■■■□□ 17.2
DDX55Q8NHQ9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC22.9■■□□□ 1.266e-11■■■□□ 17.2
DDX55Q8NHQ9 CD320-203ENST00000596002 1729 ntTSL 1 (best)22.61■■□□□ 1.216e-11■■■□□ 17.2
DDX55Q8NHQ9 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.076e-11■■■□□ 17.2
DDX55Q8NHQ9 CD320-206ENST00000599573 861 ntTSL 221.34■■□□□ 1.016e-11■■■□□ 17.2
DDX55Q8NHQ9 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.312e-6■■■□□ 17.2
DDX55Q8NHQ9 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.312e-6■■■□□ 17.2
DDX55Q8NHQ9 CSAG4-201ENST00000361201 755 ntTSL 2 BASIC12.77□□□□□ -0.372e-6■■■□□ 17.2
DDX55Q8NHQ9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.789e-9■■■□□ 17.2
DDX55Q8NHQ9 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.039e-9■■■□□ 17.2
DDX55Q8NHQ9 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.29e-9■■■□□ 17.2
DDX55Q8NHQ9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.741e-13■■■□□ 17.2
DDX55Q8NHQ9 ATP6V0B-208ENST00000473485 1664 ntTSL 225.1■■□□□ 1.611e-13■■■□□ 17.2
DDX55Q8NHQ9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC23.81■■□□□ 1.41e-13■■■□□ 17.2
DDX55Q8NHQ9 ATP6V0B-203ENST00000468183 2432 ntTSL 1 (best)22.77■■□□□ 1.241e-13■■■□□ 17.2
DDX55Q8NHQ9 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC19.33■□□□□ 0.681e-13■■■□□ 17.2
DDX55Q8NHQ9 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC19.33■□□□□ 0.681e-13■■■□□ 17.2
DDX55Q8NHQ9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.588e-8■■■□□ 17.2
DDX55Q8NHQ9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.158e-8■■■□□ 17.2
DDX55Q8NHQ9 NEU4-211ENST00000435855 2281 ntTSL 222.22■■□□□ 1.158e-8■■■□□ 17.2
DDX55Q8NHQ9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.88■■□□□ 1.098e-8■■■□□ 17.2
DDX55Q8NHQ9 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.988e-8■■■□□ 17.2
DDX55Q8NHQ9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.73■□□□□ 0.918e-8■■■□□ 17.2
DDX55Q8NHQ9 NEU4-217ENST00000618597 3013 ntTSL 220.68■□□□□ 0.98e-8■■■□□ 17.2
DDX55Q8NHQ9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.74e-12■■■□□ 17.2
DDX55Q8NHQ9 MYO18A-218ENST00000546105 1442 ntTSL 224■■□□□ 1.432e-8■■■□□ 17.2
DDX55Q8NHQ9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.36■□□□□ 0.373e-36■■■□□ 17.1
DDX55Q8NHQ9 CALU-201ENST00000249364 3357 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.193e-36■■■□□ 17.1
DDX55Q8NHQ9 CALU-206ENST00000542996 4225 ntTSL 1 (best) BASIC11.18□□□□□ -0.623e-36■■■□□ 17.1
DDX55Q8NHQ9 CALU-204ENST00000493278 589 ntTSL 35.77□□□□□ -1.493e-36■■■□□ 17.1
DDX55Q8NHQ9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.831e-6■■■□□ 17.1
DDX55Q8NHQ9 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.08■□□□□ 0.482e-7■■■□□ 17.1
DDX55Q8NHQ9 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC17.29■□□□□ 0.362e-7■■■□□ 17.1
DDX55Q8NHQ9 PPIE-210ENST00000475350 1213 ntTSL 211.98□□□□□ -0.492e-7■■■□□ 17.1
DDX55Q8NHQ9 PPIE-204ENST00000372835 842 ntTSL 311.71□□□□□ -0.532e-7■■■□□ 17.1
DDX55Q8NHQ9 PPIE-201ENST00000324379 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.552e-7■■■□□ 17.1
DDX55Q8NHQ9 PPIE-212ENST00000482751 2564 ntTSL 210.38□□□□□ -0.752e-7■■■□□ 17.1
DDX55Q8NHQ9 PPIE-214ENST00000495526 4651 ntTSL 1 (best)8.56□□□□□ -1.042e-7■■■□□ 17.1
DDX55Q8NHQ9 SLC25A10-207ENST00000574129 1523 ntTSL 536.58■■■■□ 3.452e-9■■■□□ 17.1
Retrieved 100 of 15,504 protein–RNA pairs in 189.2 ms