Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
VRK3Q8IV63 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
VRK3Q8IV63 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.25■□□□□ 0.99
VRK3Q8IV63 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.25■□□□□ 0.99
VRK3Q8IV63 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.25■□□□□ 0.99
VRK3Q8IV63 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.25■□□□□ 0.99
VRK3Q8IV63 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.25■□□□□ 0.99
VRK3Q8IV63 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
VRK3Q8IV63 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.25■□□□□ 0.99
VRK3Q8IV63 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.24■□□□□ 0.99
VRK3Q8IV63 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VRK3Q8IV63 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.24■□□□□ 0.99
VRK3Q8IV63 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VRK3Q8IV63 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.24■□□□□ 0.99
VRK3Q8IV63 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VRK3Q8IV63 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
VRK3Q8IV63 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.24■□□□□ 0.99
VRK3Q8IV63 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VRK3Q8IV63 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK3Q8IV63 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VRK3Q8IV63 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK3Q8IV63 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 AC105265.2-201ENST00000467189 838 ntBASIC21.23■□□□□ 0.99
VRK3Q8IV63 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VRK3Q8IV63 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK3Q8IV63 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK3Q8IV63 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.23■□□□□ 0.99
VRK3Q8IV63 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.22■□□□□ 0.99
VRK3Q8IV63 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VRK3Q8IV63 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.21■□□□□ 0.99
VRK3Q8IV63 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.21■□□□□ 0.99
VRK3Q8IV63 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
VRK3Q8IV63 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VRK3Q8IV63 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
VRK3Q8IV63 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 AC092053.2-201ENST00000640557 1818 ntBASIC21.2■□□□□ 0.98
VRK3Q8IV63 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms