Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.99■□□□□ 0.95
CLDN9O95484 AL138724.1-201ENST00000606771 1088 ntBASIC20.99■□□□□ 0.95
CLDN9O95484 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CLDN9O95484 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN9O95484 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN9O95484 FBXW4P1-201ENST00000426721 2239 ntBASIC20.98■□□□□ 0.95
CLDN9O95484 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN9O95484 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.98■□□□□ 0.95
CLDN9O95484 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.98■□□□□ 0.95
CLDN9O95484 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.98■□□□□ 0.95
CLDN9O95484 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.95
CLDN9O95484 AC079089.2-201ENST00000531211 1277 ntBASIC20.98■□□□□ 0.95
CLDN9O95484 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN9O95484 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CLDN9O95484 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN9O95484 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CLDN9O95484 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CLDN9O95484 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN9O95484 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN9O95484 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN9O95484 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN9O95484 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 SERBP1P1-201ENST00000396021 1160 ntBASIC20.97■□□□□ 0.95
CLDN9O95484 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.97■□□□□ 0.95
CLDN9O95484 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN9O95484 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN9O95484 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN9O95484 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CLDN9O95484 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.96■□□□□ 0.95
CLDN9O95484 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN9O95484 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.96■□□□□ 0.95
CLDN9O95484 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CLDN9O95484 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CLDN9O95484 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CLDN9O95484 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN9O95484 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.95■□□□□ 0.94
CLDN9O95484 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.95■□□□□ 0.94
CLDN9O95484 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.95■□□□□ 0.94
CLDN9O95484 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLDN9O95484 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN9O95484 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CLDN9O95484 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN9O95484 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.94■□□□□ 0.94
CLDN9O95484 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.94■□□□□ 0.94
CLDN9O95484 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.94■□□□□ 0.94
CLDN9O95484 AC087239.1-201ENST00000622671 572 ntBASIC20.94■□□□□ 0.94
CLDN9O95484 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.94■□□□□ 0.94
CLDN9O95484 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN9O95484 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN9O95484 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN9O95484 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.94■□□□□ 0.94
CLDN9O95484 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN9O95484 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN9O95484 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN9O95484 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CLDN9O95484 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN9O95484 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN9O95484 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
CLDN9O95484 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
CLDN9O95484 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN9O95484 AC010525.1-201ENST00000585559 441 ntBASIC20.93■□□□□ 0.94
CLDN9O95484 AC011298.3-201ENST00000615796 283 ntBASIC20.93■□□□□ 0.94
CLDN9O95484 AC136469.2-201ENST00000623944 1028 ntBASIC20.93■□□□□ 0.94
CLDN9O95484 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.93■□□□□ 0.94
CLDN9O95484 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CLDN9O95484 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN9O95484 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN9O95484 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CLDN9O95484 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN9O95484 PKD1P6-201ENST00000343738 4769 ntBASIC20.93■□□□□ 0.94
CLDN9O95484 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CLDN9O95484 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CLDN9O95484 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms