Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.682e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.242e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.51■□□□□ 0.072e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.49■□□□□ 0.072e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.022e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-211ENST00000564521 2534 ntTSL 514.33□□□□□ -0.122e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.132e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.162e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC13.14□□□□□ -0.312e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.442e-7■■■■□ 19.9
SMNDC1O75940 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.442e-7■■■■□ 19.9
SMNDC1O75940 RPL3-203ENST00000402527 1205 ntTSL 516.46■□□□□ 0.234e-48■■■■□ 19.9
SMNDC1O75940 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.61■□□□□ 0.092e-6■■■■□ 19.9
SMNDC1O75940 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.72■■□□□ 1.552e-6■■■■□ 19.9
SMNDC1O75940 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.752e-6■■■■□ 19.9
SMNDC1O75940 GRK2-207ENST00000529738 500 ntTSL 218.9■□□□□ 0.622e-6■■■■□ 19.9
SMNDC1O75940 GRK2-202ENST00000416281 4493 ntTSL 214.2□□□□□ -0.142e-6■■■■□ 19.9
SMNDC1O75940 GRK2-213ENST00000533077 3453 ntTSL 211.24□□□□□ -0.612e-6■■■■□ 19.9
SMNDC1O75940 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.89■□□□□ 0.776e-7■■■■□ 19.9
SMNDC1O75940 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.576e-7■■■■□ 19.9
SMNDC1O75940 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.576e-7■■■■□ 19.9
SMNDC1O75940 SEPT9-229ENST00000590576 583 ntTSL 318.27■□□□□ 0.526e-7■■■■□ 19.9
SMNDC1O75940 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.33■□□□□ 0.366e-7■■■■□ 19.9
SMNDC1O75940 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.73■□□□□ 0.276e-7■■■■□ 19.9
SMNDC1O75940 SEPT9-222ENST00000589070 582 ntTSL 316.63■□□□□ 0.256e-7■■■■□ 19.9
SMNDC1O75940 SEPT9-217ENST00000587237 548 ntTSL 512.97□□□□□ -0.336e-7■■■■□ 19.9
SMNDC1O75940 SEPT9-240ENST00000591833 576 ntTSL 412.85□□□□□ -0.356e-7■■■■□ 19.9
SMNDC1O75940 DGAT1-207ENST00000531896 981 ntTSL 322.43■■□□□ 1.185e-11■■■■□ 19.9
SMNDC1O75940 DGAT1-204ENST00000525371 840 ntTSL 518.56■□□□□ 0.565e-11■■■■□ 19.9
SMNDC1O75940 RBMX-204ENST00000464781 1852 ntTSL 213.66□□□□□ -0.224e-80■■■■□ 19.8
SMNDC1O75940 RBMX-210ENST00000565907 563 ntTSL 213.1□□□□□ -0.314e-80■■■■□ 19.8
SMNDC1O75940 RBMX-201ENST00000320676 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.314e-80■■■■□ 19.8
SMNDC1O75940 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC11.73□□□□□ -0.534e-80■■■■□ 19.8
SMNDC1O75940 RBMX-211ENST00000567262 477 ntTSL 510.95□□□□□ -0.664e-80■■■■□ 19.8
SMNDC1O75940 RBMX-208ENST00000563370 577 ntTSL 310.95□□□□□ -0.664e-80■■■■□ 19.8
SMNDC1O75940 RBMX-207ENST00000562646 2148 ntTSL 1 (best) BASIC9.83□□□□□ -0.844e-80■■■■□ 19.8
SMNDC1O75940 RBMX-212ENST00000568578 4887 ntTSL 1 (best)9.78□□□□□ -0.844e-80■■■■□ 19.8
SMNDC1O75940 RBMX-202ENST00000419968 940 ntTSL 58.32□□□□□ -1.084e-80■■■■□ 19.8
SMNDC1O75940 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6□□□□□ -1.454e-80■■■■□ 19.8
SMNDC1O75940 SNORD61-201ENST00000384252 73 ntBASIC3.27□□□□□ -1.894e-80■■■■□ 19.8
SMNDC1O75940 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.17■□□□□ 0.822e-6■■■■□ 19.8
SMNDC1O75940 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.532e-6■■■■□ 19.8
SMNDC1O75940 GS1-600G8.3-201ENST00000431486 2249 ntTSL 1 (best) BASIC8.8□□□□□ -13e-8■■■■□ 19.8
SMNDC1O75940 AC092127.1-201ENST00000567093 3455 ntBASIC15.32■□□□□ 0.043e-7■■■■□ 19.8
SMNDC1O75940 MTA1-220ENST00000552286 1943 ntTSL 218.99■□□□□ 0.636e-8■■■■□ 19.8
SMNDC1O75940 MTA1-206ENST00000434050 2050 ntTSL 1 (best)16.69■□□□□ 0.266e-8■■■■□ 19.8
SMNDC1O75940 PLEKHH3-203ENST00000587627 1047 ntTSL 520.84■□□□□ 0.932e-6■■■■□ 19.8
SMNDC1O75940 PLEKHH3-208ENST00000591544 617 ntTSL 313.97□□□□□ -0.172e-6■■■■□ 19.8
SMNDC1O75940 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.49□□□□□ -0.252e-10■■■■□ 19.8
SMNDC1O75940 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.392e-10■■■■□ 19.8
SMNDC1O75940 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.392e-10■■■■□ 19.8
SMNDC1O75940 RIT1-203ENST00000461050 803 ntTSL 511.89□□□□□ -0.512e-10■■■■□ 19.8
SMNDC1O75940 RIT1-204ENST00000462687 548 ntTSL 311.85□□□□□ -0.512e-10■■■■□ 19.8
SMNDC1O75940 NACA-201ENST00000356769 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.542e-10■■■■□ 19.8
SMNDC1O75940 RIT1-202ENST00000368323 3445 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.752e-10■■■■□ 19.8
SMNDC1O75940 NACA-212ENST00000549259 690 ntTSL 510.01□□□□□ -0.812e-10■■■■□ 19.8
SMNDC1O75940 NACA-215ENST00000550920 752 ntTSL 59□□□□□ -0.972e-10■■■■□ 19.8
SMNDC1O75940 NACA-216ENST00000550952 2922 ntTSL 2 BASIC8.67□□□□□ -1.022e-10■■■■□ 19.8
SMNDC1O75940 NACA-204ENST00000546392 802 ntAPPRIS P1 TSL 2 BASIC8.37□□□□□ -1.072e-10■■■■□ 19.8
SMNDC1O75940 NACA-220ENST00000552055 521 ntTSL 57.78□□□□□ -1.162e-10■■■■□ 19.8
SMNDC1O75940 RIT1-201ENST00000368322 855 ntTSL 3 BASIC7.53□□□□□ -1.22e-10■■■■□ 19.8
SMNDC1O75940 NACA-203ENST00000454682 6629 ntTSL 5 BASIC7.33□□□□□ -1.242e-10■■■■□ 19.8
SMNDC1O75940 NACA-208ENST00000547914 543 ntTSL 57.06□□□□□ -1.282e-10■■■■□ 19.8
SMNDC1O75940 NACA-218ENST00000551775 449 ntTSL 57.06□□□□□ -1.282e-10■■■■□ 19.8
SMNDC1O75940 NACA-210ENST00000548386 644 ntTSL 26.89□□□□□ -1.312e-10■■■■□ 19.8
SMNDC1O75940 NACA-205ENST00000546410 600 ntTSL 26.65□□□□□ -1.342e-10■■■■□ 19.8
SMNDC1O75940 RIT1-206ENST00000609492 574 ntTSL 1 (best)6.53□□□□□ -1.362e-10■■■■□ 19.8
SMNDC1O75940 NACA-211ENST00000548563 827 ntTSL 5 BASIC6.42□□□□□ -1.382e-10■■■■□ 19.8
SMNDC1O75940 NACA-206ENST00000546862 492 ntTSL 35.51□□□□□ -1.532e-10■■■■□ 19.8
SMNDC1O75940 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.62e-6■■■■□ 19.8
SMNDC1O75940 SEPT9-245ENST00000592481 1291 ntTSL 518.37■□□□□ 0.532e-6■■■■□ 19.8
SMNDC1O75940 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.32e-6■■■■□ 19.8
SMNDC1O75940 SEPT9-210ENST00000585929 906 ntTSL 413.58□□□□□ -0.242e-6■■■■□ 19.8
SMNDC1O75940 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.29□□□□□ -0.282e-6■■■■□ 19.8
SMNDC1O75940 SEPT9-213ENST00000586433 569 ntTSL 410.93□□□□□ -0.662e-6■■■■□ 19.8
SMNDC1O75940 SEPT9-238ENST00000591472 555 ntTSL 410.63□□□□□ -0.712e-6■■■■□ 19.8
SMNDC1O75940 SEPT9-234ENST00000590938 611 ntTSL 49.16□□□□□ -0.942e-6■■■■□ 19.8
SMNDC1O75940 SDF4-206ENST00000478938 2591 ntTSL 223.73■■□□□ 1.392e-6■■■■□ 19.8
SMNDC1O75940 TANGO2-213ENST00000444651 847 ntTSL 312.66□□□□□ -0.381e-6■■■■□ 19.8
SMNDC1O75940 SLC16A3-218ENST00000583444 2882 nt19.97■□□□□ 0.799e-8■■■■□ 19.8
SMNDC1O75940 SNORD56-201ENST00000413522 71 ntBASIC4.81□□□□□ -1.642e-38■■■■□ 19.7
SMNDC1O75940 AKAP8-203ENST00000595416 557 ntTSL 318.74■□□□□ 0.591e-6■■■■□ 19.7
SMNDC1O75940 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.497e-8■■■■□ 19.7
SMNDC1O75940 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC8.53□□□□□ -1.048e-14■■■■□ 19.7
SMNDC1O75940 FUS-213ENST00000570090 544 ntTSL 216.19■□□□□ 0.188e-12■■■■□ 19.7
SMNDC1O75940 FLNA-216ENST00000490936 5374 ntTSL 1 (best)16.15■□□□□ 0.187e-7■■■■□ 19.7
SMNDC1O75940 FLNA-218ENST00000498491 914 ntTSL 515.67■□□□□ 0.19e-7■■■■□ 19.7
SMNDC1O75940 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.089e-7■■■■□ 19.7
SMNDC1O75940 FLNA-217ENST00000498411 368 ntTSL 313.76□□□□□ -0.219e-7■■■■□ 19.7
SMNDC1O75940 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.269e-7■■■■□ 19.7
SMNDC1O75940 FLNA-206ENST00000420627 8225 ntTSL 513.39□□□□□ -0.279e-7■■■■□ 19.7
SMNDC1O75940 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.39e-7■■■■□ 19.7
SMNDC1O75940 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.369e-7■■■■□ 19.7
SMNDC1O75940 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC12.33□□□□□ -0.449e-7■■■■□ 19.7
SMNDC1O75940 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.449e-7■■■■□ 19.7
SMNDC1O75940 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.94■□□□□ 0.32e-6■■■■□ 19.7
SMNDC1O75940 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.73e-6■■■■□ 19.7
SMNDC1O75940 SLCO4A1-208ENST00000497209 3092 ntTSL 1 (best)16.48■□□□□ 0.233e-6■■■■□ 19.7
SMNDC1O75940 CAPN15-206ENST00000568402 540 ntTSL 412.84□□□□□ -0.354e-7■■■■□ 19.7
SMNDC1O75940 NEU4-211ENST00000435855 2281 ntTSL 222.8■■□□□ 1.242e-6■■■■□ 19.7
Retrieved 100 of 11,362 protein–RNA pairs in 127.4 ms