Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.38■□□□□ 0.53
SDCBPO00560 UNC93B8-201ENST00000511903 705 ntBASIC18.38■□□□□ 0.53
SDCBPO00560 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.38■□□□□ 0.53
SDCBPO00560 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
SDCBPO00560 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDCBPO00560 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.38■□□□□ 0.53
SDCBPO00560 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SDCBPO00560 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDCBPO00560 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SDCBPO00560 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDCBPO00560 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDCBPO00560 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.37■□□□□ 0.53
SDCBPO00560 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.37■□□□□ 0.53
SDCBPO00560 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDCBPO00560 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDCBPO00560 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDCBPO00560 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDCBPO00560 LINC01529-204ENST00000636474 1715 ntBASIC18.37■□□□□ 0.53
SDCBPO00560 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.37■□□□□ 0.53
SDCBPO00560 LINC01960-201ENST00000563759 1884 ntBASIC18.37■□□□□ 0.53
SDCBPO00560 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDCBPO00560 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
SDCBPO00560 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SDCBPO00560 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDCBPO00560 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.36■□□□□ 0.53
SDCBPO00560 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SDCBPO00560 KRT16P3-201ENST00000439127 1283 ntBASIC18.36■□□□□ 0.53
SDCBPO00560 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.36■□□□□ 0.53
SDCBPO00560 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SDCBPO00560 AC005229.4-201ENST00000610085 2198 ntBASIC18.36■□□□□ 0.53
SDCBPO00560 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDCBPO00560 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDCBPO00560 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.35■□□□□ 0.53
SDCBPO00560 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.35■□□□□ 0.53
SDCBPO00560 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.35■□□□□ 0.53
SDCBPO00560 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SDCBPO00560 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDCBPO00560 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDCBPO00560 FP325331.1-202ENST00000623531 1380 ntBASIC18.35■□□□□ 0.53
SDCBPO00560 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
SDCBPO00560 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SDCBPO00560 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.35■□□□□ 0.53
SDCBPO00560 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.35■□□□□ 0.53
SDCBPO00560 MIR6724-1-201ENST00000616420 92 ntBASIC18.35■□□□□ 0.53
SDCBPO00560 MIR6724-2-201ENST00000616483 92 ntBASIC18.35■□□□□ 0.53
SDCBPO00560 MIR6724-4-201ENST00000617390 92 ntBASIC18.35■□□□□ 0.53
SDCBPO00560 MIR6724-3-201ENST00000622482 92 ntBASIC18.35■□□□□ 0.53
SDCBPO00560 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDCBPO00560 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDCBPO00560 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDCBPO00560 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SDCBPO00560 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDCBPO00560 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SDCBPO00560 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDCBPO00560 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDCBPO00560 AC009102.2-201ENST00000606772 1639 ntBASIC18.34■□□□□ 0.53
SDCBPO00560 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SDCBPO00560 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.34■□□□□ 0.53
SDCBPO00560 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.34■□□□□ 0.53
SDCBPO00560 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDCBPO00560 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDCBPO00560 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDCBPO00560 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.34■□□□□ 0.53
SDCBPO00560 SLC25A24-204ENST00000569674 2357 ntBASIC18.33■□□□□ 0.53
SDCBPO00560 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.33■□□□□ 0.53
SDCBPO00560 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDCBPO00560 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.33■□□□□ 0.52
SDCBPO00560 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.33■□□□□ 0.52
SDCBPO00560 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.33■□□□□ 0.52
SDCBPO00560 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
SDCBPO00560 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.33■□□□□ 0.52
SDCBPO00560 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.33■□□□□ 0.52
SDCBPO00560 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDCBPO00560 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SDCBPO00560 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.33■□□□□ 0.52
SDCBPO00560 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.33■□□□□ 0.52
SDCBPO00560 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SDCBPO00560 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
SDCBPO00560 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SDCBPO00560 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.32■□□□□ 0.52
SDCBPO00560 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.32■□□□□ 0.52
SDCBPO00560 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.32■□□□□ 0.52
SDCBPO00560 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.32■□□□□ 0.52
SDCBPO00560 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SDCBPO00560 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.32■□□□□ 0.52
SDCBPO00560 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SDCBPO00560 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.31■□□□□ 0.52
SDCBPO00560 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SDCBPO00560 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
SDCBPO00560 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms