Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 DUX4L4-201ENST00000566884 1269 ntBASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 AC087623.3-201ENST00000607047 1098 ntBASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHB3Q9Y5E6 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHB3Q9Y5E6 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 AL162430.1-201ENST00000480705 870 ntBASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 AC144652.1-201ENST00000609974 1624 ntBASIC21.22■□□□□ 0.99
PCDHB3Q9Y5E6 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 AC133637.1-201ENST00000624115 1537 ntBASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHB3Q9Y5E6 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
PCDHB3Q9Y5E6 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PCDHB3Q9Y5E6 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
PCDHB3Q9Y5E6 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHB3Q9Y5E6 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 LINC01529-204ENST00000636474 1715 ntBASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 AC126544.1-201ENST00000580842 1059 ntBASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHB3Q9Y5E6 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHB3Q9Y5E6 SLC47A1P1-202ENST00000449666 945 ntBASIC21.18■□□□□ 0.98
PCDHB3Q9Y5E6 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.18■□□□□ 0.98
PCDHB3Q9Y5E6 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHB3Q9Y5E6 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHB3Q9Y5E6 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHB3Q9Y5E6 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHB3Q9Y5E6 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms