Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP3Q96DZ5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 AC123595.1-201ENST00000440769 1046 ntBASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP3Q96DZ5 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 ANOS2P-203ENST00000472227 1816 ntBASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 AC087239.1-201ENST00000622671 572 ntBASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 AL031602.1-201ENST00000633169 911 ntBASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.85■□□□□ 0.93
CLIP3Q96DZ5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 AC068587.7-201ENST00000641602 218 ntBASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP3Q96DZ5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.83■□□□□ 0.93
CLIP3Q96DZ5 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CLIP3Q96DZ5 SLC25A24-204ENST00000569674 2357 ntBASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP3Q96DZ5 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms