Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 AL161729.1-201ENST00000604104 1402 ntBASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 BX323043.1-201ENST00000641006 1765 ntBASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN3Q8NCR9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLRN3Q8NCR9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CLRN3Q8NCR9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN3Q8NCR9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CLRN3Q8NCR9 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CLRN3Q8NCR9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 AFG3L1P-217ENST00000557444 2447 ntBASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 AC244015.2-201ENST00000616358 1861 ntBASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms