Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC65Q8IXS2 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC65Q8IXS2 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC65Q8IXS2 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.14■■□□□ 1.46
CCDC65Q8IXS2 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC65Q8IXS2 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC65Q8IXS2 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC65Q8IXS2 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 AC010141.3-201ENST00000456659 717 ntBASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 AC079089.2-201ENST00000531211 1277 ntBASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC65Q8IXS2 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 BX842568.3-201ENST00000418104 571 ntBASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 PBX2P1-201ENST00000493219 1291 ntBASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 AP005435.1-201ENST00000529293 1178 ntBASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC65Q8IXS2 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
CCDC65Q8IXS2 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 AC106739.1-201ENST00000617035 715 ntBASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC65Q8IXS2 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC65Q8IXS2 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 AC233992.3-201ENST00000607491 485 ntBASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 AC110285.6-201ENST00000617652 491 ntBASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC65Q8IXS2 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC65Q8IXS2 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.08■■□□□ 1.45
CCDC65Q8IXS2 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC65Q8IXS2 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC24.08■■□□□ 1.45
CCDC65Q8IXS2 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.08■■□□□ 1.45
CCDC65Q8IXS2 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms