Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 AC068587.7-201ENST00000641602 218 ntBASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 LINC00565-201ENST00000562710 2331 ntBASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 AC087742.1-201ENST00000575880 1738 ntBASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 SLC47A1P1-202ENST00000449666 945 ntBASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 AC010525.1-201ENST00000585559 441 ntBASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 AL139246.5-201ENST00000606645 996 ntBASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRIM40Q6P9F5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 AL031602.1-201ENST00000633169 911 ntBASIC20.83■□□□□ 0.93
TRIM40Q6P9F5 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
TRIM40Q6P9F5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM40Q6P9F5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM40Q6P9F5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM40Q6P9F5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM40Q6P9F5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM40Q6P9F5 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 AC087239.1-201ENST00000622671 572 ntBASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM40Q6P9F5 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 EDA-201ENST00000338901 1233 ntBASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 BX842568.3-201ENST00000418104 571 ntBASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM40Q6P9F5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM40Q6P9F5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 AC233992.3-201ENST00000607491 485 ntBASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
TRIM40Q6P9F5 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms