Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RNF43Q68DV7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RNF43Q68DV7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.76■■□□□ 1.23
RNF43Q68DV7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.76■■□□□ 1.23
RNF43Q68DV7 AC010525.1-201ENST00000585559 441 ntBASIC22.76■■□□□ 1.23
RNF43Q68DV7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RNF43Q68DV7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RNF43Q68DV7 ECEL1P1-201ENST00000373592 1742 ntBASIC22.76■■□□□ 1.23
RNF43Q68DV7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
RNF43Q68DV7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
RNF43Q68DV7 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RNF43Q68DV7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
RNF43Q68DV7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
RNF43Q68DV7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF43Q68DV7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.75■■□□□ 1.23
RNF43Q68DV7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
RNF43Q68DV7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF43Q68DV7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RNF43Q68DV7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.75■■□□□ 1.23
RNF43Q68DV7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.75■■□□□ 1.23
RNF43Q68DV7 DUSP8P3-201ENST00000399571 1760 ntBASIC22.75■■□□□ 1.23
RNF43Q68DV7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF43Q68DV7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF43Q68DV7 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF43Q68DV7 AL353803.4-201ENST00000565882 1934 ntBASIC22.74■■□□□ 1.23
RNF43Q68DV7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF43Q68DV7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF43Q68DV7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF43Q68DV7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 AC034268.1-201ENST00000441047 882 ntBASIC22.74■■□□□ 1.23
RNF43Q68DV7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
RNF43Q68DV7 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
RNF43Q68DV7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.74■■□□□ 1.23
RNF43Q68DV7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF43Q68DV7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.73■■□□□ 1.23
RNF43Q68DV7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF43Q68DV7 ANOS2P-203ENST00000472227 1816 ntBASIC22.73■■□□□ 1.23
RNF43Q68DV7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
RNF43Q68DV7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF43Q68DV7 AC022517.1-201ENST00000592429 346 ntBASIC22.73■■□□□ 1.23
RNF43Q68DV7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
RNF43Q68DV7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.73■■□□□ 1.23
RNF43Q68DV7 AC092068.2-201ENST00000590491 1708 ntBASIC22.73■■□□□ 1.23
RNF43Q68DV7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.73■■□□□ 1.23
RNF43Q68DV7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF43Q68DV7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
RNF43Q68DV7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.73■■□□□ 1.23
RNF43Q68DV7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF43Q68DV7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.72■■□□□ 1.23
RNF43Q68DV7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
RNF43Q68DV7 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.72■■□□□ 1.23
RNF43Q68DV7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RNF43Q68DV7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
RNF43Q68DV7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
RNF43Q68DV7 IGHV3-19-201ENST00000521488 291 ntBASIC22.72■■□□□ 1.23
RNF43Q68DV7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF43Q68DV7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC22.72■■□□□ 1.23
RNF43Q68DV7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.72■■□□□ 1.23
RNF43Q68DV7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF43Q68DV7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF43Q68DV7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RNF43Q68DV7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF43Q68DV7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF43Q68DV7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.71■■□□□ 1.23
RNF43Q68DV7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 AP005435.1-201ENST00000529293 1178 ntBASIC22.71■■□□□ 1.23
RNF43Q68DV7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF43Q68DV7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
RNF43Q68DV7 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.23
RNF43Q68DV7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RNF43Q68DV7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF43Q68DV7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF43Q68DV7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF43Q68DV7 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF43Q68DV7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22.7■■□□□ 1.22
RNF43Q68DV7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RNF43Q68DV7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms