Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.66■■□□□ 1.06
XRCC1P18887 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.66■■□□□ 1.06
XRCC1P18887 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
XRCC1P18887 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.66■■□□□ 1.06
XRCC1P18887 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.66■■□□□ 1.06
XRCC1P18887 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.65■■□□□ 1.06
XRCC1P18887 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.65■■□□□ 1.06
XRCC1P18887 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
XRCC1P18887 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.65■■□□□ 1.06
XRCC1P18887 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.65■■□□□ 1.06
XRCC1P18887 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
XRCC1P18887 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
XRCC1P18887 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
XRCC1P18887 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
XRCC1P18887 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.65■■□□□ 1.06
XRCC1P18887 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
XRCC1P18887 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.65■■□□□ 1.06
XRCC1P18887 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
XRCC1P18887 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.65■■□□□ 1.06
XRCC1P18887 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
XRCC1P18887 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
XRCC1P18887 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
XRCC1P18887 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
XRCC1P18887 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
XRCC1P18887 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.64■■□□□ 1.05
XRCC1P18887 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
XRCC1P18887 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
XRCC1P18887 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
XRCC1P18887 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
XRCC1P18887 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
XRCC1P18887 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
XRCC1P18887 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
XRCC1P18887 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
XRCC1P18887 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.63■■□□□ 1.05
XRCC1P18887 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.63■■□□□ 1.05
XRCC1P18887 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.63■■□□□ 1.05
XRCC1P18887 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
XRCC1P18887 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
XRCC1P18887 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
XRCC1P18887 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
XRCC1P18887 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.63■■□□□ 1.05
XRCC1P18887 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
XRCC1P18887 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
XRCC1P18887 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
XRCC1P18887 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.62■■□□□ 1.05
XRCC1P18887 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
XRCC1P18887 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.62■■□□□ 1.05
XRCC1P18887 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 SLC47A1P1-202ENST00000449666 945 ntBASIC21.62■■□□□ 1.05
XRCC1P18887 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.62■■□□□ 1.05
XRCC1P18887 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
XRCC1P18887 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
XRCC1P18887 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.62■■□□□ 1.05
XRCC1P18887 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.61■■□□□ 1.05
XRCC1P18887 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
XRCC1P18887 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.61■■□□□ 1.05
XRCC1P18887 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
XRCC1P18887 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
XRCC1P18887 OR2I1P-207ENST00000453522 948 ntBASIC21.61■■□□□ 1.05
XRCC1P18887 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
XRCC1P18887 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
XRCC1P18887 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
XRCC1P18887 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.61■■□□□ 1.05
XRCC1P18887 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
XRCC1P18887 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
XRCC1P18887 AL137060.1-201ENST00000618151 2648 ntBASIC21.6■■□□□ 1.05
XRCC1P18887 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
XRCC1P18887 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
XRCC1P18887 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
XRCC1P18887 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
XRCC1P18887 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
XRCC1P18887 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
XRCC1P18887 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.6■■□□□ 1.05
XRCC1P18887 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.6■■□□□ 1.05
XRCC1P18887 AC126544.1-201ENST00000580842 1059 ntBASIC21.6■■□□□ 1.05
XRCC1P18887 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
XRCC1P18887 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.59■■□□□ 1.05
XRCC1P18887 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
XRCC1P18887 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.59■■□□□ 1.05
XRCC1P18887 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
XRCC1P18887 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
XRCC1P18887 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.59■■□□□ 1.05
XRCC1P18887 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
XRCC1P18887 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
XRCC1P18887 AL353803.4-201ENST00000565882 1934 ntBASIC21.59■■□□□ 1.05
XRCC1P18887 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
XRCC1P18887 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms