Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MT-ND4P03905 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MT-ND4P03905 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.86■□□□□ 0.61
MT-ND4P03905 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MT-ND4P03905 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MT-ND4P03905 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
MT-ND4P03905 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MT-ND4P03905 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.86■□□□□ 0.61
MT-ND4P03905 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.86■□□□□ 0.61
MT-ND4P03905 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
MT-ND4P03905 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.85■□□□□ 0.61
MT-ND4P03905 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.85■□□□□ 0.61
MT-ND4P03905 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.85■□□□□ 0.61
MT-ND4P03905 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.85■□□□□ 0.61
MT-ND4P03905 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.85■□□□□ 0.61
MT-ND4P03905 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
MT-ND4P03905 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.85■□□□□ 0.61
MT-ND4P03905 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
MT-ND4P03905 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
MT-ND4P03905 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MT-ND4P03905 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MT-ND4P03905 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MT-ND4P03905 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
MT-ND4P03905 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
MT-ND4P03905 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MT-ND4P03905 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
MT-ND4P03905 AL353803.4-201ENST00000565882 1934 ntBASIC18.84■□□□□ 0.61
MT-ND4P03905 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.84■□□□□ 0.61
MT-ND4P03905 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MT-ND4P03905 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
MT-ND4P03905 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MT-ND4P03905 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MT-ND4P03905 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.83■□□□□ 0.61
MT-ND4P03905 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
MT-ND4P03905 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MT-ND4P03905 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MT-ND4P03905 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
MT-ND4P03905 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MT-ND4P03905 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.83■□□□□ 0.6
MT-ND4P03905 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
MT-ND4P03905 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.83■□□□□ 0.6
MT-ND4P03905 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
MT-ND4P03905 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
MT-ND4P03905 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.82■□□□□ 0.6
MT-ND4P03905 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
MT-ND4P03905 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
MT-ND4P03905 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.82■□□□□ 0.6
MT-ND4P03905 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.82■□□□□ 0.6
MT-ND4P03905 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.82■□□□□ 0.6
MT-ND4P03905 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.82■□□□□ 0.6
MT-ND4P03905 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 AL157384.1-201ENST00000445995 2473 ntBASIC18.82■□□□□ 0.6
MT-ND4P03905 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
MT-ND4P03905 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MT-ND4P03905 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
MT-ND4P03905 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.81■□□□□ 0.6
MT-ND4P03905 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
MT-ND4P03905 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MT-ND4P03905 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MT-ND4P03905 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.81■□□□□ 0.6
MT-ND4P03905 AC137630.3-201ENST00000607245 391 ntBASIC18.81■□□□□ 0.6
MT-ND4P03905 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MT-ND4P03905 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
MT-ND4P03905 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MT-ND4P03905 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
MT-ND4P03905 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MT-ND4P03905 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.81■□□□□ 0.6
MT-ND4P03905 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
MT-ND4P03905 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MT-ND4P03905 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MT-ND4P03905 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.8■□□□□ 0.6
MT-ND4P03905 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MT-ND4P03905 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms