Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 EP400NL-214ENST00000641289 2402 ntBASIC20.8■□□□□ 0.92
SEMA3DO95025 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SEMA3DO95025 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.8■□□□□ 0.92
SEMA3DO95025 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.8■□□□□ 0.92
SEMA3DO95025 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SEMA3DO95025 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SEMA3DO95025 AL024507.2-201ENST00000606070 2574 ntBASIC20.8■□□□□ 0.92
SEMA3DO95025 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.8■□□□□ 0.92
SEMA3DO95025 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SEMA3DO95025 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SEMA3DO95025 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SEMA3DO95025 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.8■□□□□ 0.92
SEMA3DO95025 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SEMA3DO95025 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SEMA3DO95025 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.8■□□□□ 0.92
SEMA3DO95025 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SEMA3DO95025 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
SEMA3DO95025 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.8■□□□□ 0.92
SEMA3DO95025 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SEMA3DO95025 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.79■□□□□ 0.92
SEMA3DO95025 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.79■□□□□ 0.92
SEMA3DO95025 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SEMA3DO95025 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.79■□□□□ 0.92
SEMA3DO95025 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.79■□□□□ 0.92
SEMA3DO95025 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.79■□□□□ 0.92
SEMA3DO95025 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SEMA3DO95025 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.79■□□□□ 0.92
SEMA3DO95025 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SEMA3DO95025 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.78■□□□□ 0.92
SEMA3DO95025 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SEMA3DO95025 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
SEMA3DO95025 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.78■□□□□ 0.92
SEMA3DO95025 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.78■□□□□ 0.92
SEMA3DO95025 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SEMA3DO95025 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SEMA3DO95025 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SEMA3DO95025 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.77■□□□□ 0.92
SEMA3DO95025 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.77■□□□□ 0.92
SEMA3DO95025 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.77■□□□□ 0.92
SEMA3DO95025 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.77■□□□□ 0.92
SEMA3DO95025 AC087239.1-201ENST00000622671 572 ntBASIC20.77■□□□□ 0.92
SEMA3DO95025 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.77■□□□□ 0.92
SEMA3DO95025 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SEMA3DO95025 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.77■□□□□ 0.92
SEMA3DO95025 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.77■□□□□ 0.91
SEMA3DO95025 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
SEMA3DO95025 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.76■□□□□ 0.91
SEMA3DO95025 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.76■□□□□ 0.91
SEMA3DO95025 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
SEMA3DO95025 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SEMA3DO95025 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.75■□□□□ 0.91
SEMA3DO95025 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
SEMA3DO95025 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.75■□□□□ 0.91
SEMA3DO95025 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.75■□□□□ 0.91
SEMA3DO95025 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 AC010525.1-201ENST00000585559 441 ntBASIC20.75■□□□□ 0.91
SEMA3DO95025 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SEMA3DO95025 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SEMA3DO95025 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.74■□□□□ 0.91
SEMA3DO95025 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 AC008406.3-201ENST00000620001 1374 ntBASIC20.74■□□□□ 0.91
SEMA3DO95025 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.74■□□□□ 0.91
SEMA3DO95025 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SEMA3DO95025 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms