Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM1O00151 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM1O00151 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM1O00151 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM1O00151 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PDLIM1O00151 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM1O00151 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM1O00151 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PDLIM1O00151 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM1O00151 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM1O00151 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
PDLIM1O00151 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM1O00151 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM1O00151 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PDLIM1O00151 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PDLIM1O00151 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM1O00151 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM1O00151 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.61■□□□□ 0.89
PDLIM1O00151 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.61■□□□□ 0.89
PDLIM1O00151 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.61■□□□□ 0.89
PDLIM1O00151 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.61■□□□□ 0.89
PDLIM1O00151 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
PDLIM1O00151 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM1O00151 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM1O00151 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM1O00151 MIR4281-201ENST00000580852 62 ntBASIC20.6■□□□□ 0.89
PDLIM1O00151 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.6■□□□□ 0.89
PDLIM1O00151 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM1O00151 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM1O00151 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.6■□□□□ 0.89
PDLIM1O00151 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM1O00151 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM1O00151 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM1O00151 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM1O00151 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM1O00151 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PDLIM1O00151 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PDLIM1O00151 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM1O00151 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.59■□□□□ 0.89
PDLIM1O00151 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM1O00151 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM1O00151 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PDLIM1O00151 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
PDLIM1O00151 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.58■□□□□ 0.89
PDLIM1O00151 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM1O00151 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM1O00151 AC137630.3-201ENST00000607245 391 ntBASIC20.58■□□□□ 0.89
PDLIM1O00151 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.58■□□□□ 0.89
PDLIM1O00151 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM1O00151 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM1O00151 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM1O00151 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
PDLIM1O00151 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.58■□□□□ 0.88
PDLIM1O00151 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
PDLIM1O00151 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.58■□□□□ 0.88
PDLIM1O00151 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM1O00151 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM1O00151 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM1O00151 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PDLIM1O00151 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.57■□□□□ 0.88
PDLIM1O00151 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
PDLIM1O00151 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
PDLIM1O00151 Z92544.1-202ENST00000571933 1220 ntBASIC20.57■□□□□ 0.88
PDLIM1O00151 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM1O00151 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
PDLIM1O00151 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PDLIM1O00151 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM1O00151 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM1O00151 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM1O00151 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM1O00151 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PDLIM1O00151 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.56■□□□□ 0.88
PDLIM1O00151 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PDLIM1O00151 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.56■□□□□ 0.88
PDLIM1O00151 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.56■□□□□ 0.88
PDLIM1O00151 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.56■□□□□ 0.88
PDLIM1O00151 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.56■□□□□ 0.88
PDLIM1O00151 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.56■□□□□ 0.88
PDLIM1O00151 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM1O00151 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM1O00151 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms