Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 HLA-V-202ENST00000446817 847 ntBASIC20.59■□□□□ 0.89
LRRC42Q9Y546 LINC01971-201ENST00000617888 1048 ntBASIC20.59■□□□□ 0.89
LRRC42Q9Y546 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.59■□□□□ 0.89
LRRC42Q9Y546 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L13-201ENST00000554103 1267 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L15-201ENST00000611059 1267 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L23-201ENST00000615195 1269 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L24-201ENST00000617576 1269 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L22-201ENST00000618238 1269 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L20-201ENST00000619712 1269 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L21-201ENST00000622058 1269 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L10-201ENST00000622460 1267 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 DUX4L25-201ENST00000624915 1269 ntBASIC20.58■□□□□ 0.89
LRRC42Q9Y546 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.58■□□□□ 0.89
LRRC42Q9Y546 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC42Q9Y546 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
LRRC42Q9Y546 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
LRRC42Q9Y546 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC42Q9Y546 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC42Q9Y546 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC42Q9Y546 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 AFG3L1P-217ENST00000557444 2447 ntBASIC20.56■□□□□ 0.88
LRRC42Q9Y546 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC42Q9Y546 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 AL022069.1-201ENST00000568025 1636 ntBASIC20.55■□□□□ 0.88
LRRC42Q9Y546 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.55■□□□□ 0.88
LRRC42Q9Y546 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 RPS2P35-201ENST00000443417 897 ntBASIC20.54■□□□□ 0.88
LRRC42Q9Y546 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC42Q9Y546 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms