Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP42Q9H9J4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
USP42Q9H9J4 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP42Q9H9J4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP42Q9H9J4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC27.96■■■□□ 2.07
USP42Q9H9J4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC27.96■■■□□ 2.07
USP42Q9H9J4 SMUG1P1-201ENST00000590640 811 ntBASIC27.96■■■□□ 2.07
USP42Q9H9J4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC27.96■■■□□ 2.07
USP42Q9H9J4 AC011767.1-201ENST00000617410 1153 ntBASIC27.96■■■□□ 2.07
USP42Q9H9J4 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP42Q9H9J4 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP42Q9H9J4 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USP42Q9H9J4 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
USP42Q9H9J4 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC27.95■■■□□ 2.07
USP42Q9H9J4 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
USP42Q9H9J4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC27.95■■■□□ 2.07
USP42Q9H9J4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
USP42Q9H9J4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
USP42Q9H9J4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC27.95■■■□□ 2.07
USP42Q9H9J4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC27.95■■■□□ 2.07
USP42Q9H9J4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
USP42Q9H9J4 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
USP42Q9H9J4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC27.95■■■□□ 2.06
USP42Q9H9J4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC27.95■■■□□ 2.06
USP42Q9H9J4 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
USP42Q9H9J4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
USP42Q9H9J4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
USP42Q9H9J4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC27.94■■■□□ 2.06
USP42Q9H9J4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
USP42Q9H9J4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC27.94■■■□□ 2.06
USP42Q9H9J4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC27.94■■■□□ 2.06
USP42Q9H9J4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC27.94■■■□□ 2.06
USP42Q9H9J4 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC27.94■■■□□ 2.06
USP42Q9H9J4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USP42Q9H9J4 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USP42Q9H9J4 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USP42Q9H9J4 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC27.94■■■□□ 2.06
USP42Q9H9J4 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
USP42Q9H9J4 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC27.93■■■□□ 2.06
USP42Q9H9J4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC27.93■■■□□ 2.06
USP42Q9H9J4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC27.93■■■□□ 2.06
USP42Q9H9J4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP42Q9H9J4 KRT18P11-201ENST00000435214 1283 ntBASIC27.92■■■□□ 2.06
USP42Q9H9J4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC27.92■■■□□ 2.06
USP42Q9H9J4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC27.92■■■□□ 2.06
USP42Q9H9J4 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP42Q9H9J4 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
USP42Q9H9J4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC27.92■■■□□ 2.06
USP42Q9H9J4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP42Q9H9J4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC27.92■■■□□ 2.06
USP42Q9H9J4 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP42Q9H9J4 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP42Q9H9J4 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USP42Q9H9J4 SPI1-203ENST00000533030 661 ntTSL 2 BASIC27.92■■■□□ 2.06
USP42Q9H9J4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC27.92■■■□□ 2.06
USP42Q9H9J4 AC068587.7-201ENST00000641602 218 ntBASIC27.92■■■□□ 2.06
USP42Q9H9J4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP42Q9H9J4 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC27.91■■■□□ 2.06
USP42Q9H9J4 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP42Q9H9J4 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC27.91■■■□□ 2.06
USP42Q9H9J4 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
USP42Q9H9J4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC27.91■■■□□ 2.06
USP42Q9H9J4 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC27.91■■■□□ 2.06
USP42Q9H9J4 TESC-206ENST00000541210 936 ntTSL 3 BASIC27.91■■■□□ 2.06
USP42Q9H9J4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC27.91■■■□□ 2.06
USP42Q9H9J4 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC27.91■■■□□ 2.06
USP42Q9H9J4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USP42Q9H9J4 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 ESRRAP2-201ENST00000418437 1549 ntBASIC27.9■■■□□ 2.06
USP42Q9H9J4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USP42Q9H9J4 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC27.9■■■□□ 2.06
USP42Q9H9J4 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
USP42Q9H9J4 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USP42Q9H9J4 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC27.89■■■□□ 2.06
USP42Q9H9J4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC27.89■■■□□ 2.06
USP42Q9H9J4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC27.89■■■□□ 2.06
USP42Q9H9J4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
USP42Q9H9J4 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC27.89■■■□□ 2.06
USP42Q9H9J4 AC004687.1-201ENST00000579003 1625 ntBASIC27.89■■■□□ 2.06
USP42Q9H9J4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
USP42Q9H9J4 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
USP42Q9H9J4 GPX1P1-201ENST00000388829 606 ntBASIC27.89■■■□□ 2.05
USP42Q9H9J4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
USP42Q9H9J4 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC27.89■■■□□ 2.05
USP42Q9H9J4 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC27.88■■■□□ 2.05
USP42Q9H9J4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
USP42Q9H9J4 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
USP42Q9H9J4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
USP42Q9H9J4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC27.88■■■□□ 2.05
USP42Q9H9J4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC27.88■■■□□ 2.05
USP42Q9H9J4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC27.88■■■□□ 2.05
USP42Q9H9J4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC27.88■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms