Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL21A1Q96P44 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL21A1Q96P44 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL21A1Q96P44 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL21A1Q96P44 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.55■□□□□ 0.88
COL21A1Q96P44 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.55■□□□□ 0.88
COL21A1Q96P44 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL21A1Q96P44 PKD1P6-201ENST00000343738 4769 ntBASIC20.55■□□□□ 0.88
COL21A1Q96P44 AC007375.3-201ENST00000600936 2314 ntBASIC20.55■□□□□ 0.88
COL21A1Q96P44 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL21A1Q96P44 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL21A1Q96P44 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL21A1Q96P44 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 AL024507.2-201ENST00000606070 2574 ntBASIC20.54■□□□□ 0.88
COL21A1Q96P44 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL21A1Q96P44 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.54■□□□□ 0.88
COL21A1Q96P44 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL21A1Q96P44 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.54■□□□□ 0.88
COL21A1Q96P44 DUX4L19-201ENST00000557448 1267 ntBASIC20.54■□□□□ 0.88
COL21A1Q96P44 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL21A1Q96P44 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
COL21A1Q96P44 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL21A1Q96P44 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.54■□□□□ 0.88
COL21A1Q96P44 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.53■□□□□ 0.88
COL21A1Q96P44 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.53■□□□□ 0.88
COL21A1Q96P44 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL21A1Q96P44 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
COL21A1Q96P44 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL21A1Q96P44 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL21A1Q96P44 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL21A1Q96P44 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.52■□□□□ 0.88
COL21A1Q96P44 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL21A1Q96P44 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
COL21A1Q96P44 AC006455.2-201ENST00000429931 906 ntBASIC20.52■□□□□ 0.88
COL21A1Q96P44 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.52■□□□□ 0.88
COL21A1Q96P44 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.52■□□□□ 0.88
COL21A1Q96P44 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.52■□□□□ 0.88
COL21A1Q96P44 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.52■□□□□ 0.88
COL21A1Q96P44 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.52■□□□□ 0.88
COL21A1Q96P44 AC087742.1-201ENST00000575880 1738 ntBASIC20.52■□□□□ 0.88
COL21A1Q96P44 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL21A1Q96P44 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL21A1Q96P44 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL21A1Q96P44 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL21A1Q96P44 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL21A1Q96P44 SYT6-210ENST00000641643 1587 ntBASIC20.51■□□□□ 0.87
COL21A1Q96P44 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.5■□□□□ 0.87
COL21A1Q96P44 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.5■□□□□ 0.87
COL21A1Q96P44 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.5■□□□□ 0.87
COL21A1Q96P44 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
COL21A1Q96P44 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 AC139530.1-201ENST00000575312 1977 ntBASIC20.5■□□□□ 0.87
COL21A1Q96P44 AC080038.3-201ENST00000623346 1952 ntBASIC20.5■□□□□ 0.87
COL21A1Q96P44 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL21A1Q96P44 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.49■□□□□ 0.87
COL21A1Q96P44 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL21A1Q96P44 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms