Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.65■■□□□ 1.06
CFAP54Q96N23 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CFAP54Q96N23 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CFAP54Q96N23 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CFAP54Q96N23 RCN1P1-201ENST00000400413 996 ntBASIC21.65■■□□□ 1.06
CFAP54Q96N23 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CFAP54Q96N23 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CFAP54Q96N23 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CFAP54Q96N23 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.65■■□□□ 1.06
CFAP54Q96N23 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CFAP54Q96N23 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.65■■□□□ 1.06
CFAP54Q96N23 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.65■■□□□ 1.06
CFAP54Q96N23 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.65■■□□□ 1.06
CFAP54Q96N23 AC073648.6-201ENST00000641589 218 ntBASIC21.65■■□□□ 1.06
CFAP54Q96N23 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CFAP54Q96N23 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CFAP54Q96N23 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CFAP54Q96N23 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.06
CFAP54Q96N23 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.64■■□□□ 1.06
CFAP54Q96N23 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CFAP54Q96N23 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.64■■□□□ 1.05
CFAP54Q96N23 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CFAP54Q96N23 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CFAP54Q96N23 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CFAP54Q96N23 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CFAP54Q96N23 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CFAP54Q96N23 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CFAP54Q96N23 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.64■■□□□ 1.05
CFAP54Q96N23 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.64■■□□□ 1.05
CFAP54Q96N23 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CFAP54Q96N23 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CFAP54Q96N23 MKRN4P-201ENST00000444706 1521 ntBASIC21.64■■□□□ 1.05
CFAP54Q96N23 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.63■■□□□ 1.05
CFAP54Q96N23 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CFAP54Q96N23 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.63■■□□□ 1.05
CFAP54Q96N23 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.63■■□□□ 1.05
CFAP54Q96N23 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CFAP54Q96N23 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CFAP54Q96N23 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CFAP54Q96N23 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CFAP54Q96N23 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CFAP54Q96N23 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CFAP54Q96N23 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CFAP54Q96N23 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CFAP54Q96N23 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.62■■□□□ 1.05
CFAP54Q96N23 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
CFAP54Q96N23 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.61■■□□□ 1.05
CFAP54Q96N23 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
CFAP54Q96N23 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CFAP54Q96N23 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CFAP54Q96N23 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CFAP54Q96N23 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.61■■□□□ 1.05
CFAP54Q96N23 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.61■■□□□ 1.05
CFAP54Q96N23 AC141586.4-201ENST00000624558 1573 ntBASIC21.61■■□□□ 1.05
CFAP54Q96N23 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CFAP54Q96N23 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CFAP54Q96N23 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.6■■□□□ 1.05
CFAP54Q96N23 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CFAP54Q96N23 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CFAP54Q96N23 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.6■■□□□ 1.05
CFAP54Q96N23 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.6■■□□□ 1.05
CFAP54Q96N23 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CFAP54Q96N23 BX088651.1-201ENST00000540551 451 ntBASIC21.6■■□□□ 1.05
CFAP54Q96N23 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.6■■□□□ 1.05
CFAP54Q96N23 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.6■■□□□ 1.05
CFAP54Q96N23 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CFAP54Q96N23 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CFAP54Q96N23 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CFAP54Q96N23 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CFAP54Q96N23 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CFAP54Q96N23 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CFAP54Q96N23 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CFAP54Q96N23 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 AC104187.1-201ENST00000607510 612 ntBASIC21.59■■□□□ 1.05
CFAP54Q96N23 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.59■■□□□ 1.05
CFAP54Q96N23 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CFAP54Q96N23 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.58■■□□□ 1.05
CFAP54Q96N23 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CFAP54Q96N23 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.58■■□□□ 1.05
CFAP54Q96N23 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CFAP54Q96N23 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.58■■□□□ 1.05
CFAP54Q96N23 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.58■■□□□ 1.05
CFAP54Q96N23 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.58■■□□□ 1.05
CFAP54Q96N23 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CFAP54Q96N23 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms