Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC140Q96MF4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC140Q96MF4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 AC110285.6-201ENST00000617652 491 ntBASIC16.91■□□□□ 0.3
CCDC140Q96MF4 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC140Q96MF4 LINC00526-201ENST00000581067 1875 ntBASIC16.9■□□□□ 0.3
CCDC140Q96MF4 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 AC079834.2-201ENST00000609776 1949 ntBASIC16.9■□□□□ 0.3
CCDC140Q96MF4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 AC068587.7-201ENST00000641602 218 ntBASIC16.9■□□□□ 0.3
CCDC140Q96MF4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC140Q96MF4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC140Q96MF4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC16.89■□□□□ 0.3
CCDC140Q96MF4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC140Q96MF4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
CCDC140Q96MF4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC140Q96MF4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 PBX2P1-201ENST00000493219 1291 ntBASIC16.88■□□□□ 0.29
CCDC140Q96MF4 AC106739.1-201ENST00000617035 715 ntBASIC16.88■□□□□ 0.29
CCDC140Q96MF4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC140Q96MF4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC140Q96MF4 BX842568.3-201ENST00000418104 571 ntBASIC16.87■□□□□ 0.29
CCDC140Q96MF4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms