Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
HMGB4Q8WW32 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 AC006970.2-201ENST00000450065 779 ntBASIC21.99■■□□□ 1.11
HMGB4Q8WW32 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 OXCT2P1-201ENST00000447263 1535 ntBASIC21.99■■□□□ 1.11
HMGB4Q8WW32 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.98■■□□□ 1.11
HMGB4Q8WW32 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 AL139125.2-201ENST00000623134 1869 ntBASIC21.97■■□□□ 1.11
HMGB4Q8WW32 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ESRRAP2-201ENST00000418437 1549 ntBASIC21.96■■□□□ 1.11
HMGB4Q8WW32 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.11
HMGB4Q8WW32 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 AC104771.1-201ENST00000603335 964 ntBASIC21.95■■□□□ 1.1
HMGB4Q8WW32 AC011767.1-201ENST00000617410 1153 ntBASIC21.95■■□□□ 1.1
HMGB4Q8WW32 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 CROCCP5-201ENST00000436658 830 ntBASIC21.94■■□□□ 1.1
HMGB4Q8WW32 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 KRT18P11-201ENST00000435214 1283 ntBASIC21.93■■□□□ 1.1
HMGB4Q8WW32 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.93■■□□□ 1.1
HMGB4Q8WW32 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 AL355802.2-201ENST00000402069 882 ntBASIC21.92■■□□□ 1.1
HMGB4Q8WW32 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms