Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
HMGB4Q8WW32 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 AC006970.2-201ENST00000450065 779 ntBASIC21.99■■□□□ 1.11
HMGB4Q8WW32 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HMGB4Q8WW32 OXCT2P1-201ENST00000447263 1535 ntBASIC21.99■■□□□ 1.11
HMGB4Q8WW32 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.98■■□□□ 1.11
HMGB4Q8WW32 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HMGB4Q8WW32 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 AL139125.2-201ENST00000623134 1869 ntBASIC21.97■■□□□ 1.11
HMGB4Q8WW32 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
HMGB4Q8WW32 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB4Q8WW32 ESRRAP2-201ENST00000418437 1549 ntBASIC21.96■■□□□ 1.11
HMGB4Q8WW32 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.11
HMGB4Q8WW32 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 AC104771.1-201ENST00000603335 964 ntBASIC21.95■■□□□ 1.1
HMGB4Q8WW32 AC011767.1-201ENST00000617410 1153 ntBASIC21.95■■□□□ 1.1
HMGB4Q8WW32 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB4Q8WW32 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 CROCCP5-201ENST00000436658 830 ntBASIC21.94■■□□□ 1.1
HMGB4Q8WW32 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB4Q8WW32 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 KRT18P11-201ENST00000435214 1283 ntBASIC21.93■■□□□ 1.1
HMGB4Q8WW32 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.93■■□□□ 1.1
HMGB4Q8WW32 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB4Q8WW32 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 AL355802.2-201ENST00000402069 882 ntBASIC21.92■■□□□ 1.1
HMGB4Q8WW32 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.92■■□□□ 1.1
HMGB4Q8WW32 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms